Mir-219-P3

MirGeneDB ID

Rno-Mir-219-P3

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-219a-1

Paralogues

Rno-Mir-219-P2 Rno-Mir-219-P2-as

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Aga-Mir-219 Agr-Mir-219 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cin-Mir-219 Cja-Mir-219-P3 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Eca-Mir-219-P3 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P3 Isc-Mir-219 Laf-Mir-219-P3 Lan-Mir-219 Lch-Mir-219-P3 Llo-Mir-219 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mgi-Mir-219 Mml-Mir-219-P3 Mmr-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mom-Mir-219 Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Neu-Mir-219-P3 Obi-Mir-219 Ocu-Mir-219-P3 Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P3 Pau-Mir-219 Pbv-Mir-219-P3 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pmi-Mir-219 Pve-Mir-219 Rph-Mir-219 Sha-Mir-219-P3 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sro-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Tur-Mir-219 War-Mir-219 Xbo-Mir-219

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr20: 3816184-3816247 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUCUCUCCCUGUCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAGUCUCUGGCUCCGGCCGAGAGUUGCGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGGGGGAGAG

Get precursor sequence

Structure

        10           20        30        40        50        60 
GCUUCUCUCCCUGUCCC---|   C       CU   U     A            AGUCUCU 
                    GGGC GCGGCUC  GAU GUCCA ACGCAAUUCUCG       G
                    CCCG CGCCGAG  CUG CAGGU UGCGUUGAGAGC       G
GAGAGGGGGAGCUCCAAACC^   C       CC   -     C            CGGCCUC 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-219-P3_5p

mirBase accession

MIMAT0000889

Sequence

0- UGAUUGUCCAAACGCAAUUCUCG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000889
TargetScanVert: rno-miR-219a-5p
miRDB: MIMAT0000889

Co-mature sequence

Rno-Mir-219-P3_3p

mirBase accession

MIMAT0004741

Sequence

41- AGAGUUGCGUCUGGACGUCCCGA -64

Get sequence

Proposed targets

microrna.org: MIMAT0004741
TargetScanVert: rno-miR-219a-1-3p
miRDB: MIMAT0004741