MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-219-P3b

Family name MIR-219 (all species)
Seed GAUUGUC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-219-1
Paralogues Gmo-Mir-219-P2a  Gmo-Mir-219-P3a 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cin-Mir-219  Cja-Mir-219-P3  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P3  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P3  Isc-Mir-219  Laf-Mir-219-P3  Lan-Mir-219  Lch-Mir-219-P3  Llo-Mir-219  Mal-Mir-219-P3b  Mdo-Mir-219-P3  Mgi-Mir-219  Mml-Mir-219-P3  Mmr-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mom-Mir-219  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Neu-Mir-219-P3  Obi-Mir-219  Ocu-Mir-219-P3  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P3  Pau-Mir-219  Pbv-Mir-219-P3  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P3  Rph-Mir-219  Sha-Mir-219-P3  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sro-Mir-219  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Tni-Mir-219-P3b  Tur-Mir-219  War-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1282: 19894-19956 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGUGUCUCUCUGACUGGGGGCUCGAGGUUGAUUGUCCAAACGCAAUUCUUGUGUUCCUGGUGGCAGCAGGAGUUGUGACUGGACAUCUGCCCUCUGGCCUCUACUACCGGGAGAGACAGGC
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Structure
        10          20        30         40        50        60 
GGUGUGUCUCUCUGACU--       C    UU-|  U     AA           UGUUCCU 
                   GGGGGCU GAGG   GAU GUCCA  CGCAAUUCUUG       \
                   UCUCCGG CUCC   CUA CAGGU  GUGUUGAGGAC       G
CGGACAGAGAGGGCCAUCA       U    CGU^  -     CA           GACGGUG 
 120       110       100        90         80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-219-P3b_5p
mirBase accessionMIMAT0044115
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Gmo-Mir-219-P3b_3p
mirBase accessionNone
Sequence 
40- GGAGUUGUGACUGGACAUCUGCC -63
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