MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-219-P3

Family name MIR-219 (all species)
Seed GAUUGUC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-219-P2 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cin-Mir-219  Cja-Mir-219-P3  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dre-Mir-219-P3a  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P3  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3a  Gmo-Mir-219-P3b  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P3  Isc-Mir-219  Laf-Mir-219-P3  Lan-Mir-219  Llo-Mir-219  Mal-Mir-219-P3a  Mal-Mir-219-P3b  Mdo-Mir-219-P3  Mgi-Mir-219  Mml-Mir-219-P3  Mmr-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mom-Mir-219  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Neu-Mir-219-P3  Obi-Mir-219  Ocu-Mir-219-P3  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P3  Pau-Mir-219  Pbv-Mir-219-P3  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P3  Rph-Mir-219  Sha-Mir-219-P3  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sro-Mir-219  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Tni-Mir-219-P3a  Tni-Mir-219-P3b  Tur-Mir-219  War-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127214.1: 746139-746204 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAGAGACGCAGUUGGGAAUUUUAGCUCCUGAUUGUCCAAACGCAAUUCUUGUGUCUUCUCAGAUCCAAACCAAGAAUUGUGUCUGGACAUCCUGAGCUGGAAUUUCAAAUCUUCCAAGAAAUGU
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Structure
        10          20        30        40        50        60   
GCCAGAGACGCAGUUGG--|           CU   U     A            UGUCUUCUC 
                   GAAUUUUAGCUC  GAU GUCCA ACGCAAUUCUUG         \
                   UUUAAGGUCGAG  CUA CAGGU UGUGUUAAGAAC         A
UGUAAAGAACCUUCUAAAC^           UC   -     C            CAAACCUAG 
    120       110       100         90        80        70
Deep sequencing
CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-219-P3_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Lch-Mir-219-P3_3p (predicted)
mirBase accessionNone
Sequence 
44- AGAAUUGUGUCUGGACAUCCUG -66
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