MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-219-P3a

Family name MIR-219 (all species)
Seed GAUUGUC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-219-3
Paralogues Dre-Mir-219-P2a  Dre-Mir-219-P2b 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cin-Mir-219  Cja-Mir-219-P3  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P3  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3a  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P3  Isc-Mir-219  Laf-Mir-219-P3  Lan-Mir-219  Lch-Mir-219-P3  Llo-Mir-219  Mal-Mir-219-P3a  Mdo-Mir-219-P3  Mgi-Mir-219  Mml-Mir-219-P3  Mmr-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mom-Mir-219  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Neu-Mir-219-P3  Obi-Mir-219  Ocu-Mir-219-P3  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P3  Pau-Mir-219  Pbv-Mir-219-P3  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P3  Rph-Mir-219  Sha-Mir-219-P3  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sro-Mir-219  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Tni-Mir-219-P3a  Tur-Mir-219  War-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr19: 18861780-18861840 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUCUGGUUUGAUACUGACGGUCAGGUGCUGAUUGUCCAAACGCAAUUCUUGUGCUUGUGUGAAACAGGAGUUGUGGAUGGACAUCACGCUCCUGUCUGGUCCUCACAUCUACAGGAUGG
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Structure
        10          20        30         40        50          
CUGUCUGGUUUGAUACUGA--   U    U  -|   U     AA           UGCUUG 
                     CGG CAGG GC UGAU GUCCA  CGCAAUUCUUG      \
                     GUC GUCC CG ACUA CAGGU  GUGUUGAGGAC      U
GGUAGGACAUCUACACUCCUG   U    U  C^   -     AG           AAAGUG 
 .       110       100        90         80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-219-P3a_5p

mirBase accessionMIMAT0001286
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Proposed targets TargetScanFish: dre-miR-219
Co-mature sequence

Dre-Mir-219-P3a_3p

mirBase accessionMIMAT0031989
Sequence
38- GGAGUUGUGGAUGGACAUCACGC -61
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