MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-219-P3a

Family name MIR-219 (all species)
Seed GAUUGUC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-219-3
Paralogues Dre-Mir-219-P2a  Dre-Mir-219-P2b 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cgi-Mir-219  Cin-Mir-219  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3a  Hsa-Mir-219-P3  Isc-Mir-219  Lan-Mir-219  Lch-Mir-219-P3  Mal-Mir-219-P3a  Mdo-Mir-219-P3  Mml-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Obi-Mir-219  Ocu-Mir-219-P3  Ovu-Mir-219  Pbv-Mir-219-P3  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P3  Sha-Mir-219-P3  Sko-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Tni-Mir-219-P3a  Xbo-Mir-219 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr19: 18861780-18861840 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUCUGGUUUGAUACUGACGGUCAGGUGCUGAUUGUCCAAACGCAAUUCUUGUGCUUGUGUGAAACAGGAGUUGUGGAUGGACAUCACGCUCCUGUCUGGUCCUCACAUCUACAGGAUGG
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Structure
        10          20        30         40        50          
CUGUCUGGUUUGAUACUGA--   U    U  -|   U     AA           UGCUUG 
                     CGG CAGG GC UGAU GUCCA  CGCAAUUCUUG      \
                     GUC GUCC CG ACUA CAGGU  GUGUUGAGGAC      U
GGUAGGACAUCUACACUCCUG   U    U  C^   -     AG           AAAGUG 
 .       110       100        90         80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-219-P3a_5p
mirBase accessionMIMAT0001286
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Proposed targets TargetScanFish: dre-miR-219
Co-mature sequence

Dre-Mir-219-P3a_3p
mirBase accessionMIMAT0031989
Sequence 
38- GGAGUUGUGGAUGGACAUCACGC -61
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