Mir-219-P3-as

MirGeneDB ID

Mmu-Mir-219-P3-as

Family name

MIR-219 (all species)

Seed

GACGUCC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-219c

Paralogues

Mmu-Mir-219-P2 Mmu-Mir-219-P2-as Mmu-Mir-219-P3

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Aga-Mir-219 Agr-Mir-219 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cin-Mir-219 Cja-Mir-219-P3 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Eca-Mir-219-P3 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P3 Isc-Mir-219 Laf-Mir-219-P3 Lan-Mir-219 Lch-Mir-219-P3 Llo-Mir-219 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mgi-Mir-219 Mml-Mir-219-P3 Mmr-Mir-219-P3 Mom-Mir-219 Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Neu-Mir-219-P3 Obi-Mir-219 Ocu-Mir-219-P3 Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P3 Pau-Mir-219 Pbv-Mir-219-P3 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pmi-Mir-219 Pve-Mir-219 Rno-Mir-219-P3 Rph-Mir-219 Sha-Mir-219-P3 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sro-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Tur-Mir-219 War-Mir-219 Xbo-Mir-219

Node of Origin (locus)

M. musculus

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr17: 34025012-34025073 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-219-P3-as)

Mir-219-P3 chr17: 34025010-34025072 [-] UCSC Ensembl
Mir-219-P3-as chr17: 34025012-34025073 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCCCUCGAGGUUUGGGGGCGGCGGCUCGGGACGUCCAGACGCAACUCUCGGCCGGAGCCAGAGACUCGAGAAUUGCGUUUGGACAAUCAGGAGCCGCGGCCCGGGACGGGGAGAGAAGCG

Get precursor sequence

Structure

        10         20        30         40        50        60
UCCCCCUCGAGGUUUGG-    G       GG  C-|           C     GCCGGAG 
                  GGGC GCGGCUC  GA  GUCCAGACGCAA UCUCG       C
                  CCCG CGCCGAG  CU  CAGGUUUGCGUU AGAGC       C
GCGAAGAGAGGGGCAGGG    G       GA  AA^           A     UCAGAGA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-219-P3-as_5p

mirBase accession

MIMAT0029892

Sequence

0- GGACGUCCAGACGCAACUCUCG -22

Get sequence

Proposed targets

TargetScanVert: mmu-miR-219c-5p
miRDB: MIMAT0029892

Star sequence

Mmu-Mir-219-P3-as_3p*

mirBase accession

MIMAT0029893

Sequence

40- AGAAUUGCGUUUGGACAAUCAG -62

Get sequence

Proposed targets

TargetScanVert: mmu-miR-219c-3p
miRDB: MIMAT0029893