MirGeneDB ID | Spt-Mir-219-P3 |
---|---|
Family name | MIR-219 (all species) |
Seed | GAUUGUC |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-219-P2 |
Orthologues | Aae-Mir-219 Aca-Mir-219-P3 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bla-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cgi-Mir-219 Cin-Mir-219 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Hsa-Mir-219-P3 Isc-Mir-219 Lan-Mir-219 Lch-Mir-219-P3 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mml-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Obi-Mir-219 Ocu-Mir-219-P3 Ovu-Mir-219 Pbv-Mir-219-P3 Pfl-Mir-219 Pmi-Mir-219 Rno-Mir-219-P3 Sha-Mir-219-P3 Sko-Mir-219 Spu-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Xbo-Mir-219 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009231.1: 233014-233071 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GGUCCGCCUCCCAACCUGAACCCCGGCUCCUGAUUGUCCAAACGCAAUUCUUGUCUCCGCGCCCAAGAGUUGAGUGUGGACAUCAUGAGCCGUGGAUUUGAUAUCGACGAUGGGCAGAGet precursor sequence |
Structure | 10 20 30 40 50 GGUCCGCCUCCCAACCUGAA---| C C U A G UCUC CC CGGCUC UGAU GUCCA AC CAAUUCUUG C GG GCCGAG ACUA CAGGU UG GUUGAGAAC G AGACGGGUAGCAGCUAUAGUUUA^ U U - G A CCGC 110 100 90 80 70 60 |
Deep sequencing | |
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Spt-Mir-219-P3_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence | Spt-Mir-219-P3_3p (predicted) |
mirBase accession | None |
Sequence |
35- AGAGUUGAGUGUGGACAUCAUGA -58
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|