MirGeneDB ID | Bta-Mir-219-P3 |
Family name |
MIR-219 (all species) |
Seed |
GAUUGUC |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-219-2
|
Paralogues |
Bta-Mir-219-P2
Bta-Mir-219-P2-as
|
Orthologues |
Aae-Mir-219
Aca-Mir-219-P3
Ami-Mir-219-P3
Bfl-Mir-219
Bge-Mir-219
Bla-Mir-219
Cfa-Mir-219-P3
Cgi-Mir-219
Cin-Mir-219
Cmi-Mir-219-P3
Cpi-Mir-219-P3
Cpo-Mir-219-P3
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dno-Mir-219-P3
Dpu-Mir-219
Dre-Mir-219-P3a
Dsi-Mir-219
Dya-Mir-219
Esc-Mir-219
Ete-Mir-219-P3
Gja-Mir-219-P3
Gmo-Mir-219-P3a
Gmo-Mir-219-P3b
Hsa-Mir-219-P3
Isc-Mir-219
Lan-Mir-219
Lch-Mir-219-P3
Mal-Mir-219-P3a
Mal-Mir-219-P3b
Mdo-Mir-219-P3
Mml-Mir-219-P3
Mmu-Mir-219-P3
Mmu-Mir-219-P3-as
Mun-Mir-219-P3-v1
Mun-Mir-219-P3-v2
Obi-Mir-219
Ocu-Mir-219-P3
Ovu-Mir-219
Pbv-Mir-219-P3
Pfl-Mir-219
Pmi-Mir-219
Rno-Mir-219-P3
Sha-Mir-219-P3
Sko-Mir-219
Spt-Mir-219-P3
Spu-Mir-219
Sto-Mir-219-P3-v1
Sto-Mir-219-P3-v2
Tca-Mir-219
Tni-Mir-219-P3a
Tni-Mir-219-P3b
Xbo-Mir-219
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037350.1: 7394820-7394882 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUCCCUCCCCCGCCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAGUCUCUAGCUCUGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGUCGCCCCCAAACCUCGAGGGGGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUCCCUCCCCCGCCCC--| C CU U A G AGUCUCU
GGGC GCGGCUC GAU GUCCA AC CAAUUCUCG A
CCCG UGCCGAG CUG CAGGU UG GUUGAGAGC G
AGAGGGGGAGCUCCAAACC^ C CC - C A CGGUCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Mir-219-P3_5p |
mirBase accession | None |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUCG -23
Get sequence
|
Co-mature sequence |
Bta-Mir-219-P3_3p |
mirBase accession | MIMAT0030444 |
Sequence |
41- AGAGUUGAGUCUGGACGUCCCG -63
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-219
|