Mir-219-P3

MirGeneDB ID

Gja-Mir-219-P3

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-219-P2

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bla-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cgi-Mir-219 Cin-Mir-219 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Hsa-Mir-219-P3 Isc-Mir-219 Lan-Mir-219 Lch-Mir-219-P3 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mml-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Obi-Mir-219 Ocu-Mir-219-P3 Ovu-Mir-219 Pbv-Mir-219-P3 Pfl-Mir-219 Pmi-Mir-219 Rno-Mir-219-P3 Sha-Mir-219-P3 Sko-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Xbo-Mir-219

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015167179.1: 32413-32469 [+]

Precursor
(pre-Mir +30nt flank)

ACACCCACUCCGGUACGGAGCCCCGGCUGGUGAUUGUCCAAACGCAAUUCUUGUCUGUGUGCCCGAGAGUUGAGUGUGGACAUCACGUGCCGGAGGUUUGUUGGCGGCAAGCAGACG

Get precursor sequence

Structure

        10         20         30        40        50        
ACACCCACUCCGGUACG-     -|    UG     U     A  G         UCUG 
                  GAGCC CCGGC  GUGAU GUCCA AC CAAUUCUUG    U
                  UUUGG GGCCG  CACUA CAGGU UG GUUGAGAGC    G
GCAGACGAACGGCGGUUG     A^    UG     -     G  A         CCGU 
     110       100        90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-219-P3_5p

mirBase accession

None

Sequence

0- UGAUUGUCCAAACGCAAUUCUUG -23

Get sequence

Star sequence

Gja-Mir-219-P3_3p*

mirBase accession

None

Sequence

35- AGAGUUGAGUGUGGACAUCACG -57

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