Mir-219-P2-as

MirGeneDB ID

Rno-Mir-219-P2-as

Family name

MIR-219 (all species)

Seed

GAAUUGC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-219b

Paralogues

Rno-Mir-219-P2 Rno-Mir-219-P3

Orthologues

Aae-Mir-219 Aca-Mir-219-P2 Aga-Mir-219 Agr-Mir-219 Ami-Mir-219-P2 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P2 Bta-Mir-219-P2-as Cfa-Mir-219-P2 Cfa-Mir-219-P2-as Cin-Mir-219 Cja-Mir-219-P2 Cli-Mir-219-P2 Cmi-Mir-219-P2 Cpi-Mir-219-P2 Cpo-Mir-219-P2 Cpo-Mir-219-P2-as Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P2 Dno-Mir-219-P2-as Dpu-Mir-219 Dre-Mir-219-P2a Dre-Mir-219-P2b Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Eca-Mir-219-P2 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P2 Gga-Mir-219-P2 Gja-Mir-219-P2 Gmo-Mir-219-P2a Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P2 Hsa-Mir-219-P2-as Isc-Mir-219 Laf-Mir-219-P2 Lan-Mir-219 Lch-Mir-219-P2 Llo-Mir-219 Loc-Mir-219-P2 Mal-Mir-219-P2a Mal-Mir-219-P2b Mdo-Mir-219-P2 Mgi-Mir-219 Mml-Mir-219-P2 Mml-Mir-219-P2-as Mmr-Mir-219-P2 Mmu-Mir-219-P2 Mmu-Mir-219-P2-as Mom-Mir-219 Mun-Mir-219-P2 Neu-Mir-219-P2 Oan-Mir-219-P2 Obi-Mir-219 Ocu-Mir-219-P2 Ocu-Mir-219-P2-as Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P2 Pab-Mir-219-P2-as Pau-Mir-219 Pbv-Mir-219-P2 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pma-Mir-219-o2 Pmi-Mir-219 Pve-Mir-219 Rph-Mir-219 Sha-Mir-219-P2 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P2 Spu-Mir-219 Sro-Mir-219 Sto-Mir-219-P2 Tca-Mir-219 Tgu-Mir-219-P2 Tni-Mir-219-P2a Tni-Mir-219-P2b Tur-Mir-219 War-Mir-219 Xbo-Mir-219 Xla-Mir-219-P2c Xla-Mir-219-P2d Xtr-Mir-219-P2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr3: 8407445-8407509 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-219-P2-as)

Mir-219-P2 chr3: 8407443-8407507 [-] UCSC Ensembl
Mir-219-P2-as chr3: 8407445-8407509 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGUCUCUGUUGAGACCGGAGCUCAACCACAGAUGUCCAGCCACAAUUCUCGGUUGGCCGCAGACUCGUACAAGAAUUGCGUUUGGACAAUCAGUGGUGAAGCCCCUGAGUUCAGGGCUCCGGUC

Get precursor sequence

Structure

        10          20        30         40        50        60 
CCGUCUCUGUUGAGACC--  A   CA     A  -|      CCA       CGGUUGGCCG 
                   GG GCU  ACCAC GA UGUCCAG   CAAUUCU          C
                   CC CGA  UGGUG CU ACAGGUU   GUUAAGA          A
CUGGCCUCGGGACUUGAGU  C   AG     A  A^      UGC       ACAUGCUCAG 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-219-P2-as_5p*

mirBase accession

MIMAT0017882

Sequence

0- AGAUGUCCAGCCACAAUUCUCG -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-219b
miRDB: MIMAT0017882

Mature sequence

Rno-Mir-219-P2-as_3p

mirBase accession

None

Sequence

42- AGAAUUGCGUUUGGACAAUCAGU -65

Get sequence