MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-219-P2d

Family name MIR-219 (all species)
Seed GAUUGUC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-219-P2c 
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cin-Mir-219  Cja-Mir-219-P2  Cli-Mir-219-P2  Cmi-Mir-219-P2  Cpi-Mir-219-P2  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P2  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P2  Gga-Mir-219-P2  Gja-Mir-219-P2  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Laf-Mir-219-P2  Lan-Mir-219  Lch-Mir-219-P2  Llo-Mir-219  Loc-Mir-219-P2  Mdo-Mir-219-P2  Mgi-Mir-219  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmr-Mir-219-P2  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Mom-Mir-219  Mun-Mir-219-P2  Neu-Mir-219-P2  Oan-Mir-219-P2  Obi-Mir-219  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P2  Pab-Mir-219-P2-as  Pau-Mir-219  Pbv-Mir-219-P2  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pma-Mir-219-o2  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Rph-Mir-219  Sha-Mir-219-P2  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P2  Spu-Mir-219  Sro-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Tur-Mir-219  War-Mir-219  Xbo-Mir-219  Xtr-Mir-219-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NW_016694827.1: 651974-652040 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGAUCAACGACACUGAGCUCUCGCCCUUGAUUGUCCAAACGCAAUUCUUGUUCCAAUAGAAAUUUCAAGCCAAGAAUUGUGCCUGGACAUCUGUGGCUGGUGAUCCCCGGUCUUCAGAAUCAGC
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Structure
        10          20        30        40        50        60   
CAAAGAUCAACGACACU--| GCU  C   CUU   U     AA           UUCCAAUAG 
                   GA   CU GCC   GAU GUCCA  CGCAAUUCUUG         A
                   CU   GG CGG   CUA CAGGU  GUGUUAAGAAC         A
CGACUAAGACUUCUGGCCC^ AGU  U   UGU   -     CC           CGAACUUUA 
     120       110       100         90        80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-219-P2d_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Xla-Mir-219-P2d_3p
mirBase accessionNone
Sequence 
45- AGAAUUGUGCCUGGACAUCUGU -67
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