Mir-219-P2

MirGeneDB ID

Gga-Mir-219-P2

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-219a

Paralogues

Orthologues

Aae-Mir-219 Aca-Mir-219-P2 Aga-Mir-219 Agr-Mir-219 Ami-Mir-219-P2 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P2 Bta-Mir-219-P2-as Cfa-Mir-219-P2 Cfa-Mir-219-P2-as Cin-Mir-219 Cja-Mir-219-P2 Cli-Mir-219-P2 Cmi-Mir-219-P2 Cpi-Mir-219-P2 Cpo-Mir-219-P2 Cpo-Mir-219-P2-as Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P2 Dno-Mir-219-P2-as Dpu-Mir-219 Dre-Mir-219-P2a Dre-Mir-219-P2b Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Eca-Mir-219-P2 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P2 Gja-Mir-219-P2 Gmo-Mir-219-P2a Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P2 Hsa-Mir-219-P2-as Isc-Mir-219 Laf-Mir-219-P2 Lan-Mir-219 Lch-Mir-219-P2 Llo-Mir-219 Loc-Mir-219-P2 Mal-Mir-219-P2a Mal-Mir-219-P2b Mdo-Mir-219-P2 Mgi-Mir-219 Mml-Mir-219-P2 Mml-Mir-219-P2-as Mmr-Mir-219-P2 Mmu-Mir-219-P2 Mmu-Mir-219-P2-as Mom-Mir-219 Mun-Mir-219-P2 Neu-Mir-219-P2 Oan-Mir-219-P2 Obi-Mir-219 Ocu-Mir-219-P2 Ocu-Mir-219-P2-as Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P2 Pab-Mir-219-P2-as Pau-Mir-219 Pbv-Mir-219-P2 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pma-Mir-219-o2 Pmi-Mir-219 Pve-Mir-219 Rno-Mir-219-P2 Rno-Mir-219-P2-as Rph-Mir-219 Sha-Mir-219-P2 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P2 Spu-Mir-219 Sro-Mir-219 Sto-Mir-219-P2 Tca-Mir-219 Tgu-Mir-219-P2 Tni-Mir-219-P2a Tni-Mir-219-P2b Tur-Mir-219 War-Mir-219 Xbo-Mir-219 Xla-Mir-219-P2c Xla-Mir-219-P2d Xtr-Mir-219-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

17: 5319595-5319661 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCGUGUCCGGGACGGGAAUCUCUGCUCCUGAUUGUCCAAACGCAAUUCUUGUGCGCUGGAGCCGUACGAACCAAGAAUUGUGUCUGGACAUCUGUAGCAGAGAUUUCGACUUCACCGGCGGGGCC

Get precursor sequence

Structure

        10          20        30        40        50        60   
CCGCGUGUCCGGGACGG--|          CCU   U     A            UGCGCUGGA 
                   GAAUCUCUGCU   GAU GUCCA ACGCAAUUCUUG         G
                   UUUAGAGACGA   CUA CAGGU UGUGUUAAGAAC         C
CCGGGGCGGCCACUUCAGC^          UGU   -     C            CAAGCAUGC 
     120       110       100         90        80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-219-P2_5p

mirBase accession

MIMAT0001170

Sequence

0- UGAUUGUCCAAACGCAAUUCUUG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-219a
miRDB: MIMAT0001170

Co-mature sequence

Gga-Mir-219-P2_3p

mirBase accession

None

Sequence

45- AGAAUUGUGUCUGGACAUCUGU -67

Get sequence