MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-219-o2

Family name MIR-219 (all species)
Seed GAUUGUC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-219-o1 
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cgi-Mir-219  Cin-Mir-219  Cli-Mir-219-P2  Cmi-Mir-219-P2  Cpi-Mir-219-P2  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dre-Mir-219-P2a  Dre-Mir-219-P2b  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Ete-Mir-219-P2  Gga-Mir-219-P2  Gja-Mir-219-P2  Gmo-Mir-219-P2a  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Lan-Mir-219  Lch-Mir-219-P2  Loc-Mir-219-P2  Mal-Mir-219-P2a  Mal-Mir-219-P2b  Mdo-Mir-219-P2  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Mun-Mir-219-P2  Oan-Mir-219-P2  Obi-Mir-219  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Ovu-Mir-219  Pbv-Mir-219-P2  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Sha-Mir-219-P2  Sko-Mir-219  Spt-Mir-219-P2  Spu-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Tni-Mir-219-P2a  Tni-Mir-219-P2b  Xbo-Mir-219  Xla-Mir-219-P2c  Xla-Mir-219-P2d  Xtr-Mir-219-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046127.1: 7380300-7380363 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCUCCGUUGGCCUCCGAGCUGCCCGCUCCUGAUUGUCCAAACGCAAUUCUUGAUGUUUGCUUGAAAGGCCGAGGCUUGUGUCUGGACAUCGGCAGCUGGUGGCUCCAUCAUCAUCAUCAGCAG
Get precursor sequence
Structure
        10          20        30        40        50        60  
CGCUCCGUUGGCCUCCG--|  UG  C   C     U     A      UU    AUGUUUGC 
                   AGC  CC GCU CUGAU GUCCA ACGCAA  CUUG        \
                   UCG  GG CGA GGCUA CAGGU UGUGUU  GAGC        U
GACGACUACUACUACUACC^  GU  U   C     -     C      CG    CGGAAAGU 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-219-o2_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
Co-mature sequence

Pma-Mir-219-o2_3p (predicted)
mirBase accessionNone
Sequence 
42- AGGCUUGUGUCUGGACAUCGGC -64
Get sequence