MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-219-P2a

Family name MIR-219 (all species)
Seed GAUUGUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-219-P2b  Tni-Mir-219-P3a  Tni-Mir-219-P3b 
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cin-Mir-219  Cja-Mir-219-P2  Cli-Mir-219-P2  Cmi-Mir-219-P2  Cpi-Mir-219-P2  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dre-Mir-219-P2a  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P2  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P2  Gga-Mir-219-P2  Gja-Mir-219-P2  Gmo-Mir-219-P2a  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Laf-Mir-219-P2  Lan-Mir-219  Lch-Mir-219-P2  Llo-Mir-219  Loc-Mir-219-P2  Mal-Mir-219-P2a  Mdo-Mir-219-P2  Mgi-Mir-219  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmr-Mir-219-P2  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Mom-Mir-219  Mun-Mir-219-P2  Neu-Mir-219-P2  Oan-Mir-219-P2  Obi-Mir-219  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P2  Pab-Mir-219-P2-as  Pau-Mir-219  Pbv-Mir-219-P2  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pma-Mir-219-o2  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Rph-Mir-219  Sha-Mir-219-P2  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P2  Spu-Mir-219  Sro-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Tur-Mir-219  War-Mir-219  Xbo-Mir-219  Xtr-Mir-219-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 4: 1194347-1194413 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCAGAAGCAACACCGAGUCUCUAGCGGCUGAUUGUCCAAACGCAAUUCUUGAGAAACCUCGAAUUCACCCCCAAGAAUUGUGUCUGGACAUCUGUUGCUGCAGACUCGCACUCAUCGCUGCUCGU
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Structure
        10          20        30        40        50        60   
CCGCAGAAGCAACACCG--|    C       U   U     A            AGAAACCUC 
                   AGUCU UAGCGGC GAU GUCCA ACGCAAUUCUUG         G
                   UCAGA GUCGUUG CUA CAGGU UGUGUUAAGAAC         A
UGCUCGUCGCUACUCACGC^    C       U   -     C            CCCCACUUA 
     120       110       100         90        80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-219-P2a_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Tni-Mir-219-P2a_3p
mirBase accessionNone
Sequence 
45- AGAAUUGUGUCUGGACAUCUGU -67
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