MirGeneDB ID | Lpo-Mir-219-P22 |
Family name |
MIR-219 (all species) |
Seed |
GAUUGUC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-219-P20
Lpo-Mir-219-P21
Lpo-Mir-219-P23
Lpo-Mir-219-P24
|
Orthologues |
Aae-Mir-219
Bfl-Mir-219
Bge-Mir-219
Bla-Mir-219
Cgi-Mir-219
Cin-Mir-219
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dpu-Mir-219
Dsi-Mir-219
Dya-Mir-219
Esc-Mir-219
Isc-Mir-219
Lan-Mir-219
Obi-Mir-219
Ovu-Mir-219
Pfl-Mir-219
Pmi-Mir-219
Sko-Mir-219
Spu-Mir-219
Tca-Mir-219
Xbo-Mir-219
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665794.1: 694873-694931 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUUUUAAUAGCAAGGUAAUUUCUAAGCUGUGAUUGUCCAAACGCAAUUCUUGUGUUUUAAAAAUCAAGAACUGUGUGUGGACAUCAGUGCUUGGAUCAUUAAGUCAACGAACUACAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUUUUAAUAGCAAGGUAAUU--| UG U A A UGUUU
UCUAAGC UGAU GUCCA ACGCA UUCUUG U
AGGUUCG ACUA CAGGU UGUGU AAGAAC A
AAACAUCAAGCAACUGAAUUACU^ UG - G C UAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Lpo-Mir-219-P22_5p |
mirBase accession | None |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
|
Co-mature sequence |
Lpo-Mir-219-P22_3p (predicted) |
mirBase accession | None |
Sequence |
37- AGAACUGUGUGUGGACAUCAGU -59
Get sequence
|