MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-219-P24

Family name MIR-219 (all species)
Seed GAUUGUC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-219-P20  Lpo-Mir-219-P21  Lpo-Mir-219-P22  Lpo-Mir-219-P23 
Orthologues Aae-Mir-219  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Cgi-Mir-219  Cin-Mir-219  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Isc-Mir-219  Lan-Mir-219  Obi-Mir-219  Ovu-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Sko-Mir-219  Spu-Mir-219  Tca-Mir-219  Xbo-Mir-219 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013666585.1: 42578-42636 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGGAAGCCGGAAGCUGAAUUCCAAGCUGUGAUUGUCCAAACGCAAUUCUUGUGCAUUUGAAAGCAAGAACUGUAUUUGGACAUCAGUGCUUGGGAGGAAAUACAUCCAAUACAUUAC
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Structure
        10        20          30        40        50         
GAAGGAAGCCGGAAGCUGAA--|       UG    U       CG  A      UGCAU 
                      UUCCAAGC  UGAU GUCCAAA  CA UUCUUG     U
                      AGGGUUCG  ACUA CAGGUUU  GU AAGAAC     U
CAUUACAUAACCUACAUAAAGG^       UG    -       AU  C      GAAAG 
       110       100        90         80        70        60
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Mature sequence

Lpo-Mir-219-P24_5p

mirBase accessionNone
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Lpo-Mir-219-P24_3p (predicted)

mirBase accessionNone
Sequence
37- AGAACUGUAUUUGGACAUCAGU -59
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