MirGeneDB ID | Efe-Mir-219-P9 |
Family name |
MIR-219 (all species) |
Seed |
GAUUGUC |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-219-P7
Efe-Mir-219-P8
|
Orthologues |
Aae-Mir-219
Aga-Mir-219
Agr-Mir-219
Bfl-Mir-219
Bge-Mir-219
Bko-Mir-219
Bla-Mir-219
Bpl-Mir-219
Cin-Mir-219
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dgr-Mir-219
Dlo-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dpu-Mir-219
Dsi-Mir-219
Dya-Mir-219
Eba-Mir-219
Egr-Mir-219
Esc-Mir-219
Gpa-Mir-219
Gsa-Mir-219
Gsp-Mir-219
Hmi-Mir-219
Hru-Mir-219
Isc-Mir-219
Lan-Mir-219
Llo-Mir-219
Mgi-Mir-219
Mom-Mir-219
Obi-Mir-219
Ofu-Mir-219
Ovu-Mir-219
Pau-Mir-219
Pca-Mir-219
Pcr-Mir-219
Pfl-Mir-219
Pmi-Mir-219
Pve-Mir-219
Rph-Mir-219
Sko-Mir-219
Sma-Mir-219
Sne-Mir-219
Snu-Mir-219
Spu-Mir-219
Sro-Mir-219
Tca-Mir-219
Tur-Mir-219
War-Mir-219
Xbo-Mir-219
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efet.01.125734: 1344-1402 [-]
|
Precursor (pre-Mir +30nt flank) |
GCCAGAAUGACCUUCGCAUUAAUCUGACUCUGAUUGUCCAUUCGCAGUUCUUGUUCGCGUUCUUCCAAGAACUGUGCGUGGACGUCAGUGUCCGAUUAGUGGACUUCCGGUCCGCAGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCCAGAAUGACCUUCGC--| U U U U UUCGC
AUUAAUC GAC CUGAU GUCCAU CGCAGUUCUUG G
UGAUUAG CUG GACUG CAGGUG GUGUCAAGAAC U
ACGACGCCUGGCCUUCAGG^ C U - C CUUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Efe-Mir-219-P9_5p |
mirBase accession | None |
Sequence |
0- UGAUUGUCCAUUCGCAGUUCUUG -23
Get sequence
|
Co-mature sequence |
Efe-Mir-219-P9_3p |
mirBase accession | None |
Sequence |
37- AGAACUGUGCGUGGACGUCAGU -59
Get sequence
|