Mir-219-P8

MirGeneDB ID

Efe-Mir-219-P8

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-219-P7 Efe-Mir-219-P9

Orthologues

Aae-Mir-219 Aga-Mir-219 Agr-Mir-219 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Cin-Mir-219 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dpu-Mir-219 Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Egr-Mir-219 Esc-Mir-219 Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Isc-Mir-219 Lan-Mir-219 Llo-Mir-219 Mgi-Mir-219 Mom-Mir-219 Obi-Mir-219 Ofu-Mir-219 Ovu-Mir-219 Pau-Mir-219 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pmi-Mir-219 Pve-Mir-219 Rph-Mir-219 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spu-Mir-219 Sro-Mir-219 Tca-Mir-219 Tur-Mir-219 War-Mir-219 Xbo-Mir-219

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.56519: 3866-3931 [-]

Precursor
(pre-Mir +30nt flank)

CCGAUGUUAUAUGAUGAUGUUCUGAGGUGCUGAUUGUCCGAGCGCAGUUCUUCAGUGGUCGUUGCGAUAUUCAAGAAAUGCAAUUUGGACAUCAGCACACUGCAACAGAGUAACAUCAGCACAACA

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Structure

        10          20         30        40         50        60  
CCGAUGUUAUAUGAUGA--|   CUG  -        U       C-   G     CAGUGGUCG 
                   UGUU   AG GUGCUGAU GUCCGAG  GCA UUCUU         U
                   ACAA   UC CACGACUA CAGGUUU  CGU AAGAA         U
ACAACACGACUACAAUGAG^   CG-  A        -       AA   A     CUUAUAGCG 
    120       110        100         90        80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Efe-Mir-219-P8_5p

mirBase accession

None

Sequence

0- UGAUUGUCCGAGCGCAGUUCUU -22

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Co-mature sequence

Efe-Mir-219-P8_3p

mirBase accession

None

Sequence

44- GAAAUGCAAUUUGGACAUCAGC -66

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