MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-219-P14a

Family name MIR-219 (all species)
Seed GAUUGUC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-219-P14b 
Orthologues Aae-Mir-219  Aga-Mir-219  Agr-Mir-219  Ava-Mir-219-P14  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Cin-Mir-219  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Egr-Mir-219  Esc-Mir-219  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Isc-Mir-219  Lan-Mir-219  Llo-Mir-219  Mgi-Mir-219  Mom-Mir-219  Obi-Mir-219  Ofu-Mir-219  Ovu-Mir-219  Pau-Mir-219  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Pve-Mir-219  Rph-Mir-219  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spu-Mir-219  Sro-Mir-219  Tca-Mir-219  Tur-Mir-219  War-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000006.1: 22743323-22743380 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGUUUACAGAAGAGAGGUUUUCAGGCGAUGAUUGUCCAAACGCAUUUCUUGUUGUAGCUGACCAAGAACUGUUUUUGGACAUCAGUGCUUGAGAGUUGAAACAACAAAAUGAAGCA
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Structure
        10          20        30        40        50         
GCAGUUUACAGAAGAGAGG--|         A    U       C   U      UUGUA 
                     UUUUCAGGCG UGAU GUCCAAA GCA UUCUUG     \
                     GAGAGUUCGU ACUA CAGGUUU UGU AAGAAC     G
ACGAAGUAAAACAACAAAGUU^         G    -       U   C      CAGUC 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-219-P14a_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAUUUCUUG -23
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Star sequence

Pdu-Mir-219-P14a_3p*
mirBase accessionNone
Sequence 
36- AGAACUGUUUUUGGACAUCAGU -58
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