MirGeneDB ID | Efe-Let-7-P11 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Let-7-P10
Efe-Let-7-P12
Efe-Let-7-P13
Efe-Let-7-P14
|
Orthologues |
Aae-Let-7
Aga-Let-7
Agr-Let-7
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Egr-Let-7
Esc-Let-7
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Mgi-Let-7
Mom-Let-7
Npo-Let-7
Obi-Let-7
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spu-Let-7
Sro-Let-7
Tca-Let-7
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efet.01.45480: 2322-2390 [-]
|
Precursor (pre-Mir +30nt flank) |
CGAGGCCACGUGCUGCAACAUAGCCCCAGUUGAGGUAGUAGGUUGUAUAGUCAGAGUUACACCAAUUUCUGGCGGACUGUACAACCCGCUAGCUUUCCCUGGGGAUUGCCUAGCAACGCUGAAGACCUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGAGGCCACGUGCUGCAA---| UAG UU- G UA AGAGUUACAC
CA CCCCAG GAG UAG GGUUGUAUAGUC C
GU GGGGUC UUC AUC CCAACAUGUCAG A
UUCCAGAAGUCGCAACGAUCC^ UA- CCU G GC GCGGUCUUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Efe-Let-7-P11_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUC -22
Get sequence
|
Star sequence |
Efe-Let-7-P11_3p* |
mirBase accession | None |
Sequence |
46- CUGUACAACCCGCUAGCUUUCCC -69
Get sequence
|