MirGeneDB ID | Laf-Mir-324 |
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Family name | MIR-324 (all species) |
Seed | GCAUCCC |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-324 Cfa-Mir-324 Cja-Mir-324 Cpo-Mir-324 Dno-Mir-324 Eca-Mir-324 Ete-Mir-324 Hsa-Mir-324 Mml-Mir-324 Mmr-Mir-324 Mmu-Mir-324 Ocu-Mir-324 Pab-Mir-324 Rno-Mir-324 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010074.1: 11180350-11180406 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGUGCAGAAGCUGAACUGACUAUGCCUCUCCGCAUCCCCUAGGGCAUUGGUGUGAAGCUGGAGACCCACUGCCCCAGGUGCUGCUGGGGGUUGUAGUCUGACCCAGCGGAGAGAAAGGet precursor sequence |
Structure | 10 20 30 40 50 UGUGCAGAAGCUGAACU--| GC C UCC A U U GAAG GACUAU CUCUC GCA CCU GGGCA UGG GU C CUGAUG GGGGG CGU GGA CCCGU ACC CA U GAAAGAGAGGCGACCCAGU^ UU U CGU C C - GAGG 110 100 90 80 70 60 |
Deep sequencing | |
Comment | There is a second Dicer cut -2 on both arms. |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Laf-Mir-324_5p |
mirBase accession | None |
Sequence |
0- CGCAUCCCCUAGGGCAUUGGUGU -23
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|
Star sequence | Laf-Mir-324_3p* |
mirBase accession | None |
Sequence |
35- CCACUGCCCCAGGUGCUGCUGG -57
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