| MirGeneDB ID | Llo-Mir-87-o24 |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Mir-87-o25
Llo-Mir-87-o26
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343007.1: 5142453-5142511 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAAGAGGAAGAAGAUGACAUCAUGUUGGUCAUGCCUGAAAUUUUCGCUCGGACCUGUAUUAAAAAAGGUGAGCAAAGUUUCAGGUGUGAUUAAUAGAUGGCACUGCAUCUGGAUCUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAAGAGGAAGAAGAUGA---| A C GG GUAU
CAUC UGUUGGUCAUGCCUGAAAUUUU GCUC ACCU U
GUAG AUAAUUAGUGUGGACUUUGAAA CGAG UGGA A
GUGUCUAGGUCUACGUCACG^ - - -- AAAA
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Llo-Mir-87-o24_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AUGCCUGAAAUUUUCGCUCGGACCU -25
Get sequence
|
|---|
| Mature sequence |
Llo-Mir-87-o24_3p |
| mirBase accession | None |
|---|
| Sequence |
37- GUGAGCAAAGUUUCAGGUGUGA -59
Get sequence
|
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