| MirGeneDB ID | Llo-Mir-87-o25 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Mir-87-o24
Llo-Mir-87-o26
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343007.1: 5143452-5143509 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGAACCCAAUAGCGAUGCACAUGUCUGCUAUGCCUGAAAUUUUCGCUAUAGCCUGUUAGCUGAAGGUGAGCAAUGUUUCAGGUGUGAGCCACAGGUGGCGUUGCCAUCUGCGGCCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAGAACCCAAUAGCGAUG--| A CU - U C AUA GUUA
CAC UGU GCU AUGCCUGAAAU UU GCU GCCU \
GUG ACA CGA UGUGGACUUUG AA CGA UGGA G
UUCCGGCGUCUACCGUUGCG^ G C- G U - G-- AGUC
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Llo-Mir-87-o25_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AUGCCUGAAAUUUUCGCUAUAGCCU -25
Get sequence
|
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| Mature sequence |
Llo-Mir-87-o25_3p |
| mirBase accession | None |
|---|
| Sequence |
36- GUGAGCAAUGUUUCAGGUGUGA -58
Get sequence
|
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