| MirGeneDB ID | Llo-Mir-87-o26 |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Mir-87-o24
Llo-Mir-87-o25
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343007.1: 5143736-5143795 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUUUACAGAAGAUUUUGCCAAUGUUGGUCGUGCCUGAGAUUUUCGCUCUGACCUGAAUUUACGAGAGGUGAGCAAAGUUUCAGGUGUGACUGACAGCUAGCACCAUCACCCUGAGACAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUUACAGAAGAUUUU- CAA-| UG UG C UG GAAUU
GC UGU GUCG CCUGAGAUUUU GCUC ACCU \
CG ACA CAGU GGACUUUGAAA CGAG UGGA U
AACAGAGUCCCACUACCA AUCG^ GU GU - -- GAGCA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Llo-Mir-87-o26_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GUGCCUGAGAUUUUCGCUCUGACCU -25
Get sequence
|
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| Mature sequence |
Llo-Mir-87-o26_3p |
| mirBase accession | None |
|---|
| Sequence |
38- GUGAGCAAAGUUUCAGGUGUGA -60
Get sequence
|
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