Mir-31-P9

MirGeneDB ID

Loc-Mir-31-P9

Family name

MIR-31 (all species)

Seed

GGCAAGA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-31-P8

Orthologues

Aae-Mir-31 Aca-Mir-31 Aga-Mir-31 Agr-Mir-31 Ami-Mir-31 Asu-Mir-31 Ava-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cel-Mir-31 Cfa-Mir-31 Cin-Mir-31 Cja-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dgr-Mir-31 Dlo-Mir-31 Dma-Mir-31 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Eba-Mir-31 Ebu-Mir-31 Eca-Mir-31 Efe-Mir-31 Egr-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gmo-Mir-31 Gsa-Mir-31 Hme-Mir-31 Hmi-Mir-31 Hru-Mir-31 Hsa-Mir-31 Isc-Mir-31 Laf-Mir-31 Lch-Mir-31 Lgi-Mir-31 Llo-Mir-31 Mal-Mir-31 Mdo-Mir-31 Mgi-Mir-31 Mml-Mir-31 Mmr-Mir-31 Mmu-Mir-31 Mom-Mir-31 Mun-Mir-31 Neu-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ofu-Mir-31 Ovu-Mir-31 Pab-Mir-31 Pau-Mir-31 Pbv-Mir-31 Pca-Mir-31 Pdu-Mir-31 Pfl-Mir-31 Pve-Mir-31 Rno-Mir-31 Rph-Mir-31 Sha-Mir-31 Sko-Mir-31 Sma-Mir-31 Snu-Mir-31 Spt-Mir-31 Spu-Mir-31 Sro-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 War-Mir-31 Xbo-Mir-31 Xtr-Mir-31

Node of Origin (locus)

L. oculatus

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG4: 59481960-59482019 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GACUGCUUGAGAAUCUGGGAUUUGGAGUGAAGGCAAGAUGUUGGCAUAGCUGUUGAAUUCUAUGACCUGCUAUGCCUUCAGAUUGUCAUCUUUCCUAUCCUCUUCCAUGCAAGCAUACUA

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Structure

        10           20        30        40        50         
GACUGCUUGAGAAUCUG---|   UU    U  A     GA  UU        UGUUGAAU 
                    GGAU  GGAG GA GGCAA  UG  GGCAUAGC        U
                    CCUA  CCUU CU CUGUU  AC  CCGUAUCG        C
AUCAUACGAACGUACCUUCU^   U-    U  A     AG  UU        UCCAGUAU 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-31-P9_5p

mirBase accession

None

Sequence

0- AGGCAAGAUGUUGGCAUAGCUGU -23

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Star sequence

Loc-Mir-31-P9_3p*

mirBase accession

None

Sequence

37- UGCUAUGCCUUCAGAUUGUCAUC -60

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