MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-31

Family name MIR-31 (all species)
Seed GGCAAGA
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-31
Paralogues
Orthologues Aae-Mir-31  Aca-Mir-31  Aga-Mir-31  Agr-Mir-31  Ami-Mir-31  Asu-Mir-31  Ava-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bko-Mir-31-P21  Bko-Mir-31-P22  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cin-Mir-31  Cja-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dan-Mir-31-P1  Dan-Mir-31-P2  Dgr-Mir-31  Dlo-Mir-31  Dma-Mir-31  Dme-Mir-31-P1  Dme-Mir-31-P2  Dmo-Mir-31-P1  Dmo-Mir-31-P2  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Dsi-Mir-31-P1  Dsi-Mir-31-P2  Dya-Mir-31-P1  Dya-Mir-31-P2  Eba-Mir-31  Ebu-Mir-31  Eca-Mir-31  Efe-Mir-31  Egr-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gja-Mir-31-P10  Gja-Mir-31-P11  Gja-Mir-31-P12  Gmo-Mir-31  Gpa-Mir-31-P1  Gpa-Mir-31-P2a  Gpa-Mir-31-P2b  Gsa-Mir-31  Hme-Mir-31  Hmi-Mir-31  Hru-Mir-31  Hsa-Mir-31  Isc-Mir-31  Laf-Mir-31  Lan-Mir-31-P6  Lan-Mir-31-P7  Lch-Mir-31  Lgi-Mir-31  Llo-Mir-31  Loc-Mir-31-P8  Loc-Mir-31-P9  Lpo-Mir-31-P13  Lpo-Mir-31-P14  Lpo-Mir-31-P15  Lpo-Mir-31-P16  Mal-Mir-31  Mdo-Mir-31  Mgi-Mir-31  Mml-Mir-31  Mmr-Mir-31  Mmu-Mir-31  Mom-Mir-31  Mun-Mir-31  Neu-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ofu-Mir-31  Ovu-Mir-31  Pab-Mir-31  Pau-Mir-31  Pbv-Mir-31  Pca-Mir-31  Pcr-Mir-31-P23  Pcr-Mir-31-P24  Pdu-Mir-31  Pfl-Mir-31  Pmi-Mir-31-P3  Pmi-Mir-31-P4  Pmi-Mir-31-P5a  Pmi-Mir-31-P5b  Pve-Mir-31  Rno-Mir-31  Rph-Mir-31  Sha-Mir-31  Sko-Mir-31  Sme-Mir-31-P19  Sme-Mir-31-P20  Snu-Mir-31  Spt-Mir-31  Spu-Mir-31  Sro-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  War-Mir-31  Xbo-Mir-31  Xla-Mir-31-P17  Xla-Mir-31-P18  Xtr-Mir-31 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601629.3: 3356536-3356599 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUUUACGAAGAAACAUGCUGUUUAUUGUUGGCAAGAUUAUGGCGAAGCUGAAUAAACCACAAAGUGUUUCAGCUUCCCCUGAUACUGCCAACAAACAUGGCAUUUUCCUCCGUAUAUGUAUU
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Structure
        10           20        30        40        50        60  
ACUUUUACGAAGAAACA---|     UUA         AG    U  C        AUAAACCA 
                    UGCUGU   UUGUUGGCA  AUUA GG GAAGCUGA        \
                    ACGGUA   AACAACCGU  UAGU CC CUUCGACU        C
UUAUGUAUAUGCCUCCUUUU^     CA-         CA    C  -        UUGUGAAA 
  120       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Mature sequence

Sma-Mir-31_5p
mirBase accessionMIMAT0025038
Sequence 
0- UGGCAAGAUUAUGGCGAAGCUGA -23
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Star sequence

Sma-Mir-31_3p* (predicted)
mirBase accessionMIMAT0032136
Sequence 
42- AGCUUCCCCUGAUACUGCCAAC -64
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