MirGeneDB 3.0
MirGeneDB ID

Pmi-Mir-31-P4

Family name MIR-31 (all species)
Seed GGCAAGA
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-31-1
Paralogues Pmi-Mir-31-P3  Pmi-Mir-31-P5a  Pmi-Mir-31-P5b 
Orthologues Aae-Mir-31  Aca-Mir-31  Aga-Mir-31  Agr-Mir-31  Ami-Mir-31  Asu-Mir-31  Ava-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cin-Mir-31  Cja-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dgr-Mir-31  Dlo-Mir-31  Dma-Mir-31  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Eba-Mir-31  Ebu-Mir-31  Eca-Mir-31  Efe-Mir-31  Egr-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gmo-Mir-31  Gsa-Mir-31  Hme-Mir-31  Hmi-Mir-31  Hru-Mir-31  Hsa-Mir-31  Isc-Mir-31  Laf-Mir-31  Lch-Mir-31  Lgi-Mir-31  Llo-Mir-31  Mal-Mir-31  Mdo-Mir-31  Mgi-Mir-31  Mml-Mir-31  Mmr-Mir-31  Mmu-Mir-31  Mom-Mir-31  Mun-Mir-31  Neu-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ofu-Mir-31  Ovu-Mir-31  Pab-Mir-31  Pau-Mir-31  Pbv-Mir-31  Pca-Mir-31  Pdu-Mir-31  Pfl-Mir-31  Pve-Mir-31  Rno-Mir-31  Rph-Mir-31  Sha-Mir-31  Sko-Mir-31  Sma-Mir-31  Snu-Mir-31  Spt-Mir-31  Spu-Mir-31  Sro-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  War-Mir-31  Xbo-Mir-31  Xtr-Mir-31 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)		 JH770732.1: 21556-21616 [+]
Clustered miRNAs
(< 50kb from Mir-31-P4)		 Mir-31-P3 JH770732.1: 21164-21227 [+]
Mir-31-P4 JH770732.1: 21556-21616 [+]
Mir-31-P5a JH770732.1: 22547-22607 [+]
Mir-31-P5b JH770732.1: 22547-22607 [+]
Precursor
(pre-Mir +30nt flank)
AGAACAUGUUCAAAUUAGCGAGUGUAGAAAAGGCAAGAUGUUGGCAUAGCUGUUGUUGCCAAAAAACCAGCUGUACCUACAUAUUGCCAUUUGUCCACUUGCCCAAUCUUUGCAGUUGUCG
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Structure
        10          20        30        40        50          
AGAACAUGUUCAAAUUA--|      UAG   A     G    U  C       UUGUUGC 
                   GCGAGUG   AAA GGCAA AUGU GG AUAGCUG       \
                   CGUUCAC   UUU CCGUU UACA CC UGUCGAC       C
GCUGUUGACGUUUCUAACC^      CUG   A     A    U  A       CAAAAAA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Em To
Mature sequence

Pmi-Mir-31-P4_5p
mirBase accessionMIMAT0032147
Sequence 
0- AGGCAAGAUGUUGGCAUAGCUG -22
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Star sequence

Pmi-Mir-31-P4_3p*
mirBase accessionNone
Sequence 
39- GCUGUACCUACAUAUUGCCAUU -61
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