MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-31

Family name MIR-31 (all species)
Seed GGCAAGA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-31  Aca-Mir-31  Ami-Mir-31  Asu-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cgi-Mir-31  Cin-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dan-Mir-31-P1  Dan-Mir-31-P2  Dma-Mir-31  Dme-Mir-31-P1  Dme-Mir-31-P2  Dmo-Mir-31-P1  Dmo-Mir-31-P2  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Dsi-Mir-31-P1  Dsi-Mir-31-P2  Dya-Mir-31-P1  Dya-Mir-31-P2  Ebu-Mir-31  Efe-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gja-Mir-31-P10  Gja-Mir-31-P11  Gja-Mir-31-P12  Gmo-Mir-31  Hme-Mir-31  Hsa-Mir-31  Isc-Mir-31  Lan-Mir-31-P6  Lan-Mir-31-P7  Lch-Mir-31  Lgi-Mir-31  Loc-Mir-31-P8  Loc-Mir-31-P9  Lpo-Mir-31-P13  Lpo-Mir-31-P14  Lpo-Mir-31-P15  Lpo-Mir-31-P16  Mal-Mir-31  Mdo-Mir-31  Mml-Mir-31  Mmu-Mir-31  Mun-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ovu-Mir-31  Pbv-Mir-31  Pfl-Mir-31  Pmi-Mir-31-P3  Pmi-Mir-31-P4  Pmi-Mir-31-P5a  Pmi-Mir-31-P5b  Rno-Mir-31  Sha-Mir-31  Sko-Mir-31  Sme-Mir-31-P19  Sme-Mir-31-P20  Spt-Mir-31  Spu-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Xbo-Mir-31  Xla-Mir-31-P17  Xla-Mir-31-P18  Xtr-Mir-31 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 12278863-12278922 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGAGGAACUCCGGGGGCUCCAGGAGAGGAGGCAAGAUGCUGGCAUAGCUGCUGACGCUGGCUCCCGGCUGUGCCAGCAACCUGCCCUCUUUCUGCCUCCCUUUGCCUCCACCAUCUGC
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Structure
        10        20          30        40        50         
CCUGAGGAACUCCGGGGGCUCCA--|     GA    AGA              CUGACG 
                         GGAGAG  GGCA   UGCUGGCAUAGCUG      C
                         UCUUUC  CCGU   ACGACCGUGUCGGC      U
CGUCUACCACCUCCGUUUCCCUCCG^     UC    CCA              CCUCGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-31_5p
mirBase accessionNone
Sequence 
0- AGGCAAGAUGCUGGCAUAGCUGC -23
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Star sequence

Tni-Mir-31_3p* (predicted)
mirBase accessionNone
Sequence 
37- GGCUGUGCCAGCAACCUGCCCUC -60
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