Mir-31-P19

MirGeneDB ID

Sme-Mir-31-P19

Family name

MIR-31 (all species)

Seed

GGCAAGA

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-31a

Paralogues

Sme-Mir-31-P20

Orthologues

Aae-Mir-31 Aca-Mir-31 Ami-Mir-31 Asu-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cel-Mir-31 Cfa-Mir-31 Cgi-Mir-31 Cin-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dma-Mir-31 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Ebu-Mir-31 Efe-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gmo-Mir-31 Hme-Mir-31 Hsa-Mir-31 Isc-Mir-31 Lch-Mir-31 Lgi-Mir-31 Mal-Mir-31 Mdo-Mir-31 Mml-Mir-31 Mmu-Mir-31 Mun-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ovu-Mir-31 Pbv-Mir-31 Pfl-Mir-31 Rno-Mir-31 Sha-Mir-31 Sko-Mir-31 Spt-Mir-31 Spu-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 Xbo-Mir-31 Xtr-Mir-31

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000098_dd_Smes_g4_98: 1507690-1507758 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAAAAAUGAAUUUUUAUUGUUAUGUUUUAAGGCAAGAUGUUGGCAUAACUGACAACAAUUCGAAAGGAUUAAUUUCAGUUACGUUAGCACUUACCAGAUAGCAAAACAAAAUUCAUCUUAACAUUUUU

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Structure

        10          20        30        40        50        60    
UAAAAAAUGAAUUUUUA--|    A    UUAA  C   A       A       CAACAAUUCG 
                   UUGUU UGUU    GG AAG UGUUGGC UAACUGA          A
                   AACAA ACGA    CC UUC ACGAUUG AUUGACU          A
UUUUUACAAUUCUACUUAA^    A    UAGA  A   -       C       UUAAUUAGGA 
       120       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Mir-31-P19_5p

mirBase accession

MIMAT0003979

Sequence

0- AGGCAAGAUGUUGGCAUAACUGA -23

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Star sequence

Sme-Mir-31-P19_3p*

mirBase accession

MIMAT0012104

Sequence

47- AGUUACGUUAGCACUUACCAGA -69

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