MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-31-P19

Family name MIR-31 (all species)
Seed GGCAAGA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-31a
Paralogues Sme-Mir-31-P20 
Orthologues Aae-Mir-31  Aca-Mir-31  Aga-Mir-31  Agr-Mir-31  Ami-Mir-31  Asu-Mir-31  Ava-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cin-Mir-31  Cja-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dgr-Mir-31  Dlo-Mir-31  Dma-Mir-31  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Eba-Mir-31  Ebu-Mir-31  Eca-Mir-31  Efe-Mir-31  Egr-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gmo-Mir-31  Gsa-Mir-31  Hme-Mir-31  Hmi-Mir-31  Hru-Mir-31  Hsa-Mir-31  Isc-Mir-31  Laf-Mir-31  Lch-Mir-31  Lgi-Mir-31  Llo-Mir-31  Mal-Mir-31  Mdo-Mir-31  Mgi-Mir-31  Mml-Mir-31  Mmr-Mir-31  Mmu-Mir-31  Mom-Mir-31  Mun-Mir-31  Neu-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ofu-Mir-31  Ovu-Mir-31  Pab-Mir-31  Pau-Mir-31  Pbv-Mir-31  Pca-Mir-31  Pdu-Mir-31  Pfl-Mir-31  Pve-Mir-31  Rno-Mir-31  Rph-Mir-31  Sha-Mir-31  Sko-Mir-31  Sma-Mir-31  Snu-Mir-31  Spt-Mir-31  Spu-Mir-31  Sro-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  War-Mir-31  Xbo-Mir-31  Xtr-Mir-31 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000098_dd_Smes_g4_98: 1507690-1507758 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAAAAUGAAUUUUUAUUGUUAUGUUUUAAGGCAAGAUGUUGGCAUAACUGACAACAAUUCGAAAGGAUUAAUUUCAGUUACGUUAGCACUUACCAGAUAGCAAAACAAAAUUCAUCUUAACAUUUUU
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Structure
        10          20        30        40        50        60    
UAAAAAAUGAAUUUUUA--|    A    UUAA  C   A       A       CAACAAUUCG 
                   UUGUU UGUU    GG AAG UGUUGGC UAACUGA          A
                   AACAA ACGA    CC UUC ACGAUUG AUUGACU          A
UUUUUACAAUUCUACUUAA^    A    UAGA  A   -       C       UUAAUUAGGA 
       120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-31-P19_5p
mirBase accessionMIMAT0003979
Sequence 
0- AGGCAAGAUGUUGGCAUAACUGA -23
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Star sequence

Sme-Mir-31-P19_3p*
mirBase accessionMIMAT0012104
Sequence 
47- AGUUACGUUAGCACUUACCAGA -69
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