Mir-31

MirGeneDB ID

Mgi-Mir-31

Family name

MIR-31 (all species)

Seed

GGCAAGA

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-31 Aca-Mir-31 Aga-Mir-31 Agr-Mir-31 Ami-Mir-31 Asu-Mir-31 Ava-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bko-Mir-31-P21 Bko-Mir-31-P22 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cel-Mir-31 Cfa-Mir-31 Cin-Mir-31 Cja-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dan-Mir-31-P1 Dan-Mir-31-P2 Dgr-Mir-31 Dlo-Mir-31 Dma-Mir-31 Dme-Mir-31-P1 Dme-Mir-31-P2 Dmo-Mir-31-P1 Dmo-Mir-31-P2 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Dsi-Mir-31-P1 Dsi-Mir-31-P2 Dya-Mir-31-P1 Dya-Mir-31-P2 Eba-Mir-31 Ebu-Mir-31 Eca-Mir-31 Efe-Mir-31 Egr-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gja-Mir-31-P10 Gja-Mir-31-P11 Gja-Mir-31-P12 Gmo-Mir-31 Gpa-Mir-31-P1 Gpa-Mir-31-P2a Gpa-Mir-31-P2b Gsa-Mir-31 Hme-Mir-31 Hmi-Mir-31 Hru-Mir-31 Hsa-Mir-31 Isc-Mir-31 Laf-Mir-31 Lan-Mir-31-P6 Lan-Mir-31-P7 Lch-Mir-31 Lgi-Mir-31 Llo-Mir-31 Loc-Mir-31-P8 Loc-Mir-31-P9 Lpo-Mir-31-P13 Lpo-Mir-31-P14 Lpo-Mir-31-P15 Lpo-Mir-31-P16 Mal-Mir-31 Mdo-Mir-31 Mml-Mir-31 Mmr-Mir-31 Mmu-Mir-31 Mom-Mir-31 Mun-Mir-31 Neu-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ofu-Mir-31 Ovu-Mir-31 Pab-Mir-31 Pau-Mir-31 Pbv-Mir-31 Pca-Mir-31 Pcr-Mir-31-P23 Pcr-Mir-31-P24 Pdu-Mir-31 Pfl-Mir-31 Pmi-Mir-31-P3 Pmi-Mir-31-P4 Pmi-Mir-31-P5a Pmi-Mir-31-P5b Pve-Mir-31 Rno-Mir-31 Rph-Mir-31 Sha-Mir-31 Sko-Mir-31 Sma-Mir-31 Sme-Mir-31-P19 Sme-Mir-31-P20 Snu-Mir-31 Spt-Mir-31 Spu-Mir-31 Sro-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 War-Mir-31 Xbo-Mir-31 Xla-Mir-31-P17 Xla-Mir-31-P18 Xtr-Mir-31

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold211: 287343-287398 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGAGAUAUAAGGCAUUUUGAUUCAGACUAGGCAAGAUGUUGGCAUAGCUGAUGACUAGGCUCAGCUCUGUCACAUGCUGCCAUUUCUGGGUCAUCCCUAGCAACCAGAAUCUCA

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Structure

        10          20        30        40        50        
UGUGAGAUAUAAGGCAUUU--|        CUA    AG    U    U      UGAC 
                     UGAUUCAGA   GGCA  AUGU GGCA AGCUGA    \
                     ACUGGGUCU   CCGU  UACA CUGU UCGACU    U
ACUCUAAGACCAACGAUCCCU^        UUA    CG    -    C      CGGA 
    110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Mature sequence

Mgi-Mir-31_5p

mirBase accession

None

Sequence

0- AGGCAAGAUGUUGGCAUAGCUGA -23

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Star sequence

Mgi-Mir-31_3p*

mirBase accession

None

Sequence

34- AGCUCUGUCACAUGCUGCCAUU -56

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