MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-31-P18

Family name MIR-31 (all species)
Seed GGCAAGA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-31-P17 
Orthologues Aae-Mir-31  Aca-Mir-31  Aga-Mir-31  Agr-Mir-31  Ami-Mir-31  Asu-Mir-31  Ava-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cin-Mir-31  Cja-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dgr-Mir-31  Dlo-Mir-31  Dma-Mir-31  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Eba-Mir-31  Ebu-Mir-31  Eca-Mir-31  Efe-Mir-31  Egr-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gmo-Mir-31  Gsa-Mir-31  Hme-Mir-31  Hmi-Mir-31  Hru-Mir-31  Hsa-Mir-31  Isc-Mir-31  Laf-Mir-31  Lch-Mir-31  Lgi-Mir-31  Llo-Mir-31  Mal-Mir-31  Mdo-Mir-31  Mgi-Mir-31  Mml-Mir-31  Mmr-Mir-31  Mmu-Mir-31  Mom-Mir-31  Mun-Mir-31  Neu-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ofu-Mir-31  Ovu-Mir-31  Pab-Mir-31  Pau-Mir-31  Pbv-Mir-31  Pca-Mir-31  Pdu-Mir-31  Pfl-Mir-31  Pve-Mir-31  Rno-Mir-31  Rph-Mir-31  Sha-Mir-31  Sko-Mir-31  Sma-Mir-31  Snu-Mir-31  Spt-Mir-31  Spu-Mir-31  Sro-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  War-Mir-31  Xbo-Mir-31  Xtr-Mir-31 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030725.1: 98082247-98082304 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUAAAUCGACCUACAGUAGUACUAGAGAGAAGGCAAGAUUUUGGCAUAGCUGUAGCAUCUGAACCUGUUGUGCCAUCAGAUUGCCAUCUUUCUUGUCUUCCAGCACCAGAGAACUUGU
Get precursor sequence
Structure
        10           20        30        40        50        
UUAAAUCGACCUACAGU---| U  U       A     GAUUU         UGUAGCA 
                    AG AC AGAGAGA GGCAA     UGGCAUAGC       U
                    UC UG UCUUUCU CCGUU     ACCGUGUUG       C
UGUUCAAGAGACCACGACCU^ -  U       A     AGACU         UCCAAGU 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-31-P18_5p
mirBase accessionNone
Sequence 
0- AGGCAAGAUUUUGGCAUAGCUGU -23
Get sequence
Star sequence

Xla-Mir-31-P18_3p* (predicted)
mirBase accessionNone
Sequence 
35- UGUUGUGCCAUCAGAUUGCCAUC -58
Get sequence