MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-133-P11

Family name MIR-133 (all species)
Seed UGGUCCC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-133-P12  Lpo-Mir-133-P13  Lpo-Mir-133-P14  Lpo-Mir-133-P15 
Orthologues Aae-Mir-133  Aga-Mir-133  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spu-Mir-133  Tca-Mir-133  Tur-Mir-133  War-Mir-133  Xbo-Mir-133 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013681176.1: 2882-2945 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUGAUACAUCUACAGCAUGCAAAGCUCUAGUUGGUUGACACUGGGCCAAAUUGGCCGAGAAUCAUUUCAUUUGGUCCCCUUCAACCAACUGUAGCUGGCAUUCUCGACAGCAUUACGUCACG
Get precursor sequence
Structure
        10           20        30        40        50        60  
UGGUGAUACAUCUACAGC---|   AA    C           CACU         UGGCCGAG 
                     AUGC  AGCU UAGUUGGUUGA    GGGCCAAAU        \
                     UACG  UCGA GUCAACCAACU    CCUGGUUUA        A
GCACUGCAUUACGACAGCUCU^   G-    U           UCC-         CUUUACUA 
  120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-133-P11_5p*
mirBase accessionNone
Sequence 
0- AGUUGGUUGACACUGGGCCAAAU -23
Get sequence
Mature sequence

Lpo-Mir-133-P11_3p
mirBase accessionNone
Sequence 
42- UUGGUCCCCUUCAACCAACUGU -64
Get sequence