| MirGeneDB ID | Lpo-Mir-133-P14 |
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| Family name |
MIR-133 (all species) |
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| Seed |
UGGUCCC |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
Lpo-Mir-133-P11
Lpo-Mir-133-P12
Lpo-Mir-133-P13
Lpo-Mir-133-P15
|
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| Orthologues |
Aae-Mir-133
Asu-Mir-133
Bge-Mir-133
Cbr-Mir-133
Cel-Mir-133
Cgi-Mir-133
Cin-Mir-133
Cte-Mir-133
Dan-Mir-133
Dma-Mir-133
Dme-Mir-133
Dmo-Mir-133
Dpu-Mir-133
Dsi-Mir-133
Dya-Mir-133
Efe-Mir-133
Esc-Mir-133
Hme-Mir-133
Isc-Mir-133
Lan-Mir-133
Lgi-Mir-133
Obi-Mir-133
Ovu-Mir-133
Spu-Mir-133
Tca-Mir-133
Xbo-Mir-133
|
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| Node of Origin (locus) |
L. polyphemus
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666779.1: 194645-194708 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UAAUCAACCAGGAAAUUAAUACCAAGCUUUAGCUGGCUGAACCUGGGCCAAAUUGUUAUCAUAUUCUGACAUUUGGUCCCCUUCAACCAGCUGUAGUUAGUAUUACUCUCAACCCAACCAAUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAAUCAACCAGGAAAUU---| CA U C CCU UGUUAUCA
AAUAC AGCU UAGCUGG UGAA GGGCCAAAU \
UUAUG UUGA GUCGACC ACUU CCUGGUUUA U
UAUAACCAACCCAACUCUCA^ A- U A CC- CAGUCUUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Lpo-Mir-133-P14_5p* |
| mirBase accession | None |
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| Sequence |
0- AGCUGGCUGAACCUGGGCCAAAU -23
Get sequence
|
|---|
| Mature sequence |
Lpo-Mir-133-P14_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUGGUCCCCUUCAACCAGCUGU -64
Get sequence
|
|---|
