MirGeneDB ID | Lpo-Mir-133-P15 |
Family name |
MIR-133 (all species) |
Seed |
UGGUCCC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-133-P11
Lpo-Mir-133-P12
Lpo-Mir-133-P13
Lpo-Mir-133-P14
|
Orthologues |
Aae-Mir-133
Aga-Mir-133
Asu-Mir-133
Bge-Mir-133
Cbr-Mir-133
Cel-Mir-133
Cin-Mir-133
Cte-Mir-133
Dan-Mir-133
Dgr-Mir-133
Dlo-Mir-133
Dma-Mir-133
Dme-Mir-133
Dmo-Mir-133
Dpu-Mir-133
Dsi-Mir-133
Dya-Mir-133
Eba-Mir-133
Efe-Mir-133
Egr-Mir-133
Esc-Mir-133
Gpa-Mir-133
Gsp-Mir-133
Hme-Mir-133
Hru-Mir-133
Isc-Mir-133
Lan-Mir-133
Lgi-Mir-133
Lhy-Mir-133
Llo-Mir-133
Mgi-Mir-133
Mom-Mir-133
Obi-Mir-133
Ofu-Mir-133
Ovu-Mir-133
Pau-Mir-133
Pca-Mir-133
Pcr-Mir-133
Pdu-Mir-133
Pve-Mir-133
Rph-Mir-133
Sma-Mir-133
Snu-Mir-133
Spu-Mir-133
Tca-Mir-133
Tur-Mir-133
War-Mir-133
Xbo-Mir-133
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665643.1: 769165-769228 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGGGAAGAAAACUGACUAUGCUAAGCUUUAGCUGGCUGAACCCGGGCCAAAUUAUUUCAUUGUUCUGACAUUUGGUCCCCUUCAACCAGCUGUAGUUAGCAUUAUUCUCAACCUAAUGACUAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGGGAAGAAAACUGACU---| G U C CCC UAUUUCAU
AUGCUAA CU UAGCUGG UGAA GGGCCAAAU \
UACGAUU GA GUCGACC ACUU CCUGGUUUA U
CAUCAGUAAUCCAACUCUUAU^ - U A CC- CAGUCUUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-133-P15_5p* |
mirBase accession | None |
Sequence |
0- AGCUGGCUGAACCCGGGCCAAAU -23
Get sequence
|
Mature sequence |
Lpo-Mir-133-P15_3p |
mirBase accession | None |
Sequence |
42- UUGGUCCCCUUCAACCAGCUGU -64
Get sequence
|