MirGeneDB ID | Lpo-Mir-5305-P1 |
Family name |
MIR-5305 (all species) |
Seed |
UGGGCUU |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-5305-P2
Lpo-Mir-5305-P3
Lpo-Mir-5305-P4
Lpo-Mir-5305-P5
Lpo-Mir-5305-P6
Lpo-Mir-5305-P7
Lpo-Mir-5305-P8
|
Orthologues |
Isc-Mir-5305
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Chelicerata
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013671937.1: 8226-8285 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUCUGAAGAUCUACACAUUUGGCGGACUCUAAGUUAAUCUCCAAGCCCAAUGGUUGCAUUCGUCAAUUGGGCUUGAAGAUUAACUUAGACCCCGCUAAAUACAUCACGUGAAGAGGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCUGAAGAUCUACAC--| AC C GGUUGC
AUUUGGCGG UCUAAGUUAAUCU CAAGCCCAAU A
UAAAUCGCC AGAUUCAAUUAGA GUUCGGGUUA U
GAAGGAGAAGUGCACUACA^ CC A ACUGCU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Lpo-Mir-5305-P1_5p* |
mirBase accession | None |
Sequence |
0- UAAGUUAAUCUCCAAGCCCAAUG -23
Get sequence
|
Mature sequence |
Lpo-Mir-5305-P1_3p |
mirBase accession | None |
Sequence |
37- UUGGGCUUGAAGAUUAACUUAGA -60
Get sequence
|