MirGeneDB ID | Mdo-Mir-325 |
Family name |
MIR-325 (all species) |
Seed |
UGAUUAA |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-325
|
Paralogues |
|
Orthologues |
Cfa-Mir-325
Eca-Mir-325
Hsa-Mir-325
Laf-Mir-325
Mml-Mir-325
Mmr-Mir-325
Mmu-Mir-325
Ocu-Mir-325
Pab-Mir-325
Rno-Mir-325
Sha-Mir-325
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (monDom5_add) |
1: 273898551-273898610 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUAUUUAUCAUUUAUUACAGUGCCUGGCACGUAGUAGGUGCUUAAUAAAUGCUUGUUGAUUGAUUGGUUGAUUAAGCACCUACUCAGUGCAAGGCACUGUGCUAGACACUGGCUGCGGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUAUUUAUCAUUUAUU--| G GU AAAU UUGUUG
ACAGUGCCU GCAC AGUAGGUGCUUAAU GC A
UGUCACGGA CGUG UCAUCCACGAAUUA UG U
GGGCGUCGGUCACAGAUCG^ A AC GU-- GUUAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Mdo-Mir-325_5p* |
mirBase accession | MIMAT0050112 |
Sequence |
0- CGUAGUAGGUGCUUAAUAAAUGC -23
Get sequence
|
Mature sequence |
Mdo-Mir-325_3p |
mirBase accession | MIMAT0050113 |
Sequence |
38- UUGAUUAAGCACCUACUCAGUG -60
Get sequence
|