MirGeneDB ID | Sha-Mir-325 |
Family name |
MIR-325 (all species) |
Seed |
UGAUUAA |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cfa-Mir-325
Eca-Mir-325
Hsa-Mir-325
Laf-Mir-325
Mdo-Mir-325
Mml-Mir-325
Mmr-Mir-325
Mmu-Mir-325
Ocu-Mir-325
Pab-Mir-325
Rno-Mir-325
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (DEVIL_add) |
GL834551.1: 1012060-1012119 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUAUUUAUUAUUUAUUACAGUGCCUGGCACGUAGUAGGUGCUUAAUAAAUGCUUGUUGAUUGAUUGGUUGAUUAAGCACCUACUCAGUGCAAGGCACUGUGCUAGACGCUGGCUGCCGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUAUUUAUUAUUUAUU--| G GU AAAU UUGUUG
ACAGUGCCU GCAC AGUAGGUGCUUAAU GC A
UGUCACGGA CGUG UCAUCCACGAAUUA UG U
AGCCGUCGGUCGCAGAUCG^ A AC GU-- GUUAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Sha-Mir-325_5p* |
mirBase accession | None |
Sequence |
0- CGUAGUAGGUGCUUAAUAAAUGC -23
Get sequence
|
Mature sequence |
Sha-Mir-325_3p |
mirBase accession | None |
Sequence |
38- UUGAUUAAGCACCUACUCAGUG -60
Get sequence
|