Mir-430-P38

MirGeneDB ID

Mml-Mir-430-P38

Family name

MIR-430 (all species)

Seed

GAAGCGC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

Paralogues

Mml-Mir-430-P1 Mml-Mir-430-P2 Mml-Mir-430-P3 Mml-Mir-430-P4 Mml-Mir-430-P5 Mml-Mir-430-P6 Mml-Mir-430-P7 Mml-Mir-430-P8 Mml-Mir-430-P9 Mml-Mir-430-P10 Mml-Mir-430-P12c Mml-Mir-430-P12d Mml-Mir-430-P12e Mml-Mir-430-P14a Mml-Mir-430-P14b Mml-Mir-430-P15 Mml-Mir-430-P16 Mml-Mir-430-P17 Mml-Mir-430-P18 Mml-Mir-430-P20 Mml-Mir-430-P21 Mml-Mir-430-P22 Mml-Mir-430-P24 Mml-Mir-430-P25 Mml-Mir-430-P27a Mml-Mir-430-P27b Mml-Mir-430-P28 Mml-Mir-430-P29a Mml-Mir-430-P29b-v1 Mml-Mir-430-P29b-v2 Mml-Mir-430-P29c Mml-Mir-430-P30 Mml-Mir-430-P31 Mml-Mir-430-P32a1 Mml-Mir-430-P32a2 Mml-Mir-430-P32b Mml-Mir-430-P33 Mml-Mir-430-P34 Mml-Mir-430-P36a1 Mml-Mir-430-P36a2 Mml-Mir-430-P36b Mml-Mir-430-P36c Mml-Mir-430-P39 Mml-Mir-430-P42 Mml-Mir-430-P43 Mml-Mir-430-P44 Mml-Mir-430-P45a Mml-Mir-430-P45b

Orthologues

Hsa-Mir-430-P38 Pab-Mir-430-P38 Pbv-Mir-430-o38

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014354.1: 53501975-53502033 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P38)

Mir-430-P18 CM014354.1: 53453376-53453434 [+] UCSC Ensembl
Mir-430-P15 CM014354.1: 53454188-53454248 [+] UCSC Ensembl
Mir-430-P20 CM014354.1: 53456559-53456619 [+] UCSC Ensembl
Mir-430-P21 CM014354.1: 53457405-53457463 [+] UCSC Ensembl
Mir-430-P22 CM014354.1: 53459381-53459439 [+] UCSC Ensembl
Mir-430-P14a CM014354.1: 53460554-53460614 [+] UCSC Ensembl
Mir-430-P24 CM014354.1: 53462909-53462967 [+] UCSC Ensembl
Mir-430-P14b CM014354.1: 53467690-53467750 [+] UCSC Ensembl
Mir-430-P28 CM014354.1: 53472112-53472171 [+] UCSC Ensembl
Mir-430-P29a CM014354.1: 53474125-53474185 [+] UCSC Ensembl
Mir-430-P30 CM014354.1: 53475275-53475339 [+] UCSC Ensembl
Mir-430-P32a1 CM014354.1: 53480586-53480645 [+] UCSC Ensembl
Mir-430-P36a1 CM014354.1: 53487417-53487475 [+] UCSC Ensembl
Mir-430-P36b CM014354.1: 53490070-53490128 [+] UCSC Ensembl
Mir-430-P36a2 CM014354.1: 53491934-53491992 [+] UCSC Ensembl
Mir-430-P36c CM014354.1: 53494528-53494589 [+] UCSC Ensembl
Mir-430-P34 CM014354.1: 53504275-53504337 [+] UCSC Ensembl
Mir-430-P32a2 CM014354.1: 53507505-53507564 [+] UCSC Ensembl
Mir-430-P29c CM014354.1: 53509478-53509536 [+] UCSC Ensembl
Mir-430-P33 CM014354.1: 53510678-53510743 [+] UCSC Ensembl
Mir-430-P44 CM014354.1: 53516856-53516916 [+] UCSC Ensembl
Mir-430-P31 CM014354.1: 53518551-53518611 [+] UCSC Ensembl
Mir-430-P39 CM014354.1: 53520125-53520184 [+] UCSC Ensembl
Mir-430-P32b CM014354.1: 53522610-53522669 [+] UCSC Ensembl
Mir-430-P45a CM014354.1: 53524156-53524217 [+] UCSC Ensembl
Mir-430-P45b CM014354.1: 53528832-53528893 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUGGAGGAAGAAGAUCUCGGGCUGUGACCCUCUAAAGGGAAGCGCUUUCUGUUGUGUGAAAGAAAACGAAGCGCUUCUCUUUGGAGCGUUACGGUUUGAGAAGCUCAACGCCGAAGCU

Get precursor sequence

Structure

        10          20        30        40        50          
ACUGGAGGAAGAAGAUC--|           C                   CU   GUGUG 
                   UCGGGCUGUGAC CUCUAAAGGGAAGCGCUUU  GUU     \
                   AGUUUGGCAUUG GAGGUUUCUCUUCGCGAAG  CAA     A
UCGAAGCCGCAACUCGAAG^           C                   --   AAGAA 
       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-430-P38_5p*

mirBase accession

None

Sequence

0- CUCUAAAGGGAAGCGCUUUCUGUU -24

Get sequence

Mature sequence

Mml-Mir-430-P38_3p

mirBase accession

None

Sequence

37- CGAAGCGCUUCUCUUUGGAGCG -59

Get sequence