| MirGeneDB ID | Nag-Mir-12593-v2 |
|---|
| Family name |
MIR-12593 (all species) |
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| Seed |
CAUUCUC |
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| Species |
Thorny-headed worm 1 (Neoechinorhynchus agilis) |
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| MiRBase ID |
|
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| Paralogues |
Nag-Mir-12593-v1
|
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| Orthologues |
Bko-Mir-12593
Bpl-Mir-12593
Ple-Mir-12593
Sne-Mir-12593
|
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| Node of Origin (locus) |
Rotifera
|
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| Node of Origin (family) |
Rotifera
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Genome context
(N_agilis_genome_min1000_bacfree) |
k149_6078: 23700-23759 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAGAGGGCAUCAUGGCGUGAACCGUCAGCGCAGCUUCGCAAGGGAUAAUGUGACGAAUAAAGGUGUCACAUUCUCUUACGUAGUGGCGUUAAUCGUUUGUGCUCAAUUAGGUCCGUAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCAGAGGGCAUCAUGGC--|UG C C A U C UA CGAAU
G AAC GU AGCGC GCU CG AAGGGA AUGUGA A
U UUG UA UUGCG UGA GC UUCUCU UACACU A
AGAUGCCUGGAUUAACUCG^GU C A G U A -- GUGGA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Nag-Mir-12593-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- GCAGCUUCGCAAGGGAUAAUGUGA -24
Get sequence
|
|---|
| Mature sequence |
Nag-Mir-12593-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- ACAUUCUCUUACGUAGUGGCGU -60
Get sequence
|
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