MirGeneDB 3.0
MirGeneDB ID

Bpl-Mir-12593

Family name MIR-12593 (all species)
Seed CAUUCUC
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues
Orthologues Ava-Mir-12593-P1a  Ava-Mir-12593-P1b  Ava-Mir-12593-P2a  Ava-Mir-12593-P2b  Bko-Mir-12593  Nag-Mir-12593-v1  Nag-Mir-12593-v2  Ple-Mir-12593  Sne-Mir-12593 
Node of Origin (locus) Rotifera
Node of Origin (family) Rotifera
Genome context
(Bpl_ASM1027981)		 QEOQ01000256.1: 676673-676748 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAAUUUGAACACGAAUGGUUCUGUUAGAAGCCCCUAUUUUGGAGAAUAAUGAUGGUUAUGAAGUAAACUUUGUAAGUUUAUUCACAUUCUCUUAGAUAGUGGCCUUUUACGGAAAACUAGCGGCUUUUUUAAAAU
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Structure
        10          20        30        40        50        60        
CCAAUUUGAACACGAAUGG--|     U   A   C      U       AA  AUGGUUAUGAAGUAA 
                     UUCUGU AGA GCC CUAUUU GGAGAAU  UG               \
                     AAGGCA UUU CGG GAUAGA UCUCUUA  AC               A
UAAAAUUUUUUCGGCGAUCAA^     U   C   U      U       C-  UUAUUUGAAUGUUUC 
    130       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bpl-Mir-12593_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCCCCUAUUUUGGAGAAUAAUG -22
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Mature sequence

Bpl-Mir-12593_3p
mirBase accessionNone
Sequence 
54- ACAUUCUCUUAGAUAGUGGCCU -76
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