MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-12593-P1b

Family name MIR-12593 (all species)
Seed CCACUCU
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-12593-P1a  Ava-Mir-12593-P2a  Ava-Mir-12593-P2b 
Orthologues Bko-Mir-12593  Bpl-Mir-12593  Ple-Mir-12593  Sne-Mir-12593 
Node of Origin (locus) A. vaga
Node of Origin (family) Rotifera
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075495.1: 11828845-11828915 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAAUAUUAACAUAGACAUCGUUUCGAUAACCACUCUUGAAGAGAAUCGAACUUGGAAACAAAAUCUAUUUGAAUAUGUUCAUUCUCUUCUAAGUGGCCGUUGAACGAUGACAAUCUCUUCAAUAUUUAU
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Structure
        10           20        30        40        50        60      
AUCAAUAUUAACAUAGA---|      U    AA     CUU         C    UUGGAAACAAAA 
                    CAUCGUU CGAU  CCACU   GAAGAGAAU GAAC            \
                    GUAGCAA GUUG  GGUGA   CUUCUCUUA CUUG            U
UAUUUAUAACUUCUCUAACA^      -    CC     AU-         -    UAUAAGUUUAUC 
 .       120       110        100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Ava-Mir-12593-P1b_5p
mirBase accessionNone
Sequence 
0- ACCACUCUUGAAGAGAAUCGAAC -23
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Star sequence

Ava-Mir-12593-P1b_3p*
mirBase accessionNone
Sequence 
50- UCAUUCUCUUCUAAGUGGCCG -71
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