| MirGeneDB ID | Ava-Mir-12593-P1b |
|---|
| Family name |
MIR-12593 (all species) |
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| Seed |
CCACUCU |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12593-P1a
Ava-Mir-12593-P2a
Ava-Mir-12593-P2b
|
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| Orthologues |
Bko-Mir-12593
Bpl-Mir-12593
Ple-Mir-12593
Sne-Mir-12593
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 11828845-11828915 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCAAUAUUAACAUAGACAUCGUUUCGAUAACCACUCUUGAAGAGAAUCGAACUUGGAAACAAAAUCUAUUUGAAUAUGUUCAUUCUCUUCUAAGUGGCCGUUGAACGAUGACAAUCUCUUCAAUAUUUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUCAAUAUUAACAUAGA---| U AA CUU C UUGGAAACAAAA
CAUCGUU CGAU CCACU GAAGAGAAU GAAC \
GUAGCAA GUUG GGUGA CUUCUCUUA CUUG U
UAUUUAUAACUUCUCUAACA^ - CC AU- - UAUAAGUUUAUC
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ava-Mir-12593-P1b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCACUCUUGAAGAGAAUCGAAC -23
Get sequence
|
|---|
| Star sequence |
Ava-Mir-12593-P1b_3p* |
| mirBase accession | None |
|---|
| Sequence |
50- UCAUUCUCUUCUAAGUGGCCG -71
Get sequence
|
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