MirGeneDB ID | Bko-Mir-12593 |
Family name |
MIR-12593 (all species) |
Seed |
CAUUCUC |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Ava-Mir-12593-P1a
Ava-Mir-12593-P1b
Ava-Mir-12593-P2a
Ava-Mir-12593-P2b
Bpl-Mir-12593
Nag-Mir-12593-v1
Nag-Mir-12593-v2
Ple-Mir-12593
Sne-Mir-12593
|
Node of Origin (locus) |
Rotifera
|
Node of Origin (family) |
Rotifera
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000401.1: 1138039-1138115 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAAUUUGAGCAAGAGUGUUUCUGUUAAAAGCCCCUAUUUUGGAGAAUAAUGAUGGUUAUGAAGUAAACUAAAUGAGUUUAUUCACAUUCUCUUAGAUAGUGGCCUUUUGCGGAAAAUUUACACCUAUUUUAAUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAAUUUGAGCAAGAGUG---| U A C U AA UGGUUAUGAAGUAA
UUUCUGU AAA GCC CUAUUU GGAGAAU UGA \
AAAGGCG UUU CGG GAUAGA UCUCUUA ACU A
UUAUAAUUUUAUCCACAUUUA^ U C U U C- UAUUUGAGUAAAUC
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Bko-Mir-12593_5p* |
mirBase accession | None |
Sequence |
0- GCCCCUAUUUUGGAGAAUAAUGA -23
Get sequence
|
Mature sequence |
Bko-Mir-12593_3p |
mirBase accession | None |
Sequence |
54- ACAUUCUCUUAGAUAGUGGCCUU -77
Get sequence
|