MirGeneDB 3.0

MirGeneDB ID

Sne-Mir-12593

Family name MIR-12593 (all species)
Seed AUUCUCU
Species Seison (Seison nebaliae)
MiRBase ID
Paralogues
Orthologues Ava-Mir-12593-P1a  Ava-Mir-12593-P1b  Ava-Mir-12593-P2a  Ava-Mir-12593-P2b  Bko-Mir-12593  Bpl-Mir-12593  Nag-Mir-12593-v1  Nag-Mir-12593-v2  Ple-Mir-12593 
Node of Origin (locus) Rotifera
Node of Origin (family) Rotifera
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual)
Sne-Mir-12593_manual_assembly: 115-197 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGACGCGUUUGAAACAGCAAUGUAGCUGCUCUCGCAAUUCCAAGGAGUGCAUCAGCACGUUCCAUUCUCUUAUCUGCCAGUGC
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Structure
          10        20         30        40  
UGAC--|  UU   AAC  C    U   -    CUC   A   C 
      GCG  UGA   AG AAUG AGC UGCU   GCA UUC A
      CGU  AUU   UC UUAC UUG ACGA   CGU GAG A
CGUGAC^  CU   C--  -    C   C    CUA   -   G 
  80        70           60        50
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Sne-Mir-12593_5p*

mirBase accessionNone
Sequence
0- UGACGCGUUUGAAACAGCAAUG -22
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Mature sequence

Sne-Mir-12593_3p

mirBase accessionNone
Sequence
62- CAUUCUCUUAUCUGCCAGUGC -83
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