MirGeneDB ID | Sne-Mir-12593 |
---|---|
Family name | MIR-12593 (all species) |
Seed | AUUCUCU |
Species | Seison (Seison nebaliae) |
MiRBase ID | |
Paralogues | |
Orthologues | Ava-Mir-12593-P1a Ava-Mir-12593-P1b Ava-Mir-12593-P2a Ava-Mir-12593-P2b Bko-Mir-12593 Bpl-Mir-12593 Nag-Mir-12593-v1 Nag-Mir-12593-v2 Ple-Mir-12593 |
Node of Origin (locus) | Rotifera |
Node of Origin (family) | Rotifera |
Genome context (S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
Sne-Mir-12593_manual_assembly: 115-197 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | UGACGCGUUUGAAACAGCAAUGUAGCUGCUCUCGCAAUUCCAAGGAGUGCAUCAGCACGUUCCAUUCUCUUAUCUGCCAGUGCGet precursor sequence |
Structure | 10 20 30 40 UGAC--| UU AAC C U - CUC A C GCG UGA AG AAUG AGC UGCU GCA UUC A CGU AUU UC UUAC UUG ACGA CGU GAG A CGUGAC^ CU C-- - C C CUA - G 80 70 60 50 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Sne-Mir-12593_5p* |
mirBase accession | None |
Sequence |
0- UGACGCGUUUGAAACAGCAAUG -22
Get sequence
|
Mature sequence | Sne-Mir-12593_3p |
mirBase accession | None |
Sequence |
62- CAUUCUCUUAUCUGCCAGUGC -83
Get sequence
|