| MirGeneDB ID | Ple-Mir-12593 |
|---|
| Family name |
MIR-12593 (all species) |
|---|
| Seed |
CAUUCUC |
|---|
| Species |
Thorny-headed worm 2 (Pomphorhynchus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ava-Mir-12593-P1a
Ava-Mir-12593-P1b
Ava-Mir-12593-P2a
Ava-Mir-12593-P2b
Bko-Mir-12593
Bpl-Mir-12593
Nag-Mir-12593-v1
Nag-Mir-12593-v2
Sne-Mir-12593
|
|---|
| Node of Origin (locus) |
Rotifera
|
|---|
| Node of Origin (family) |
Rotifera
|
|---|
Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic) |
WNNJ02001274.1: 31493-31548 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAUACUCCAGCUCACAAGCAUCGUUGGUACACUGCUAUCUUAGGGAUAGUGAAAGCCAGUAUUCACAUUCUCUUAUGUAGCAGUGUUCCCUUACAAUGCAAUACACAUGAUGGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUACUCCAGCUCACAAG C U--| U CUU UA AAGC
CAU GU GG ACACUGCUAU AGGGA GUGA C
GUA CA CC UGUGACGAUG UCUCU CACU A
AACGGUAGUACACAUAAC A UUC^ U UAU UA UAUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ple-Mir-12593_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUGCUAUCUUAGGGAUAGUGA -22
Get sequence
|
|---|
| Mature sequence |
Ple-Mir-12593_3p |
| mirBase accession | None |
|---|
| Sequence |
34- ACAUUCUCUUAUGUAGCAGUGU -56
Get sequence
|
|---|
