| MirGeneDB ID | Ava-Mir-12593-P1a |
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| Family name |
MIR-12593 (all species) |
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| Seed |
CCACUCU |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12593-P1b
Ava-Mir-12593-P2a
Ava-Mir-12593-P2b
|
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| Orthologues |
Bko-Mir-12593
Bpl-Mir-12593
Ple-Mir-12593
Sne-Mir-12593
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 7795919-7795989 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUGUUUUUUUUAUAAACAUCGUUUCGAUCACCACUCUUGAAGAGAAUCGGACUUGCAAGCAAAAUCGAUUCGAAUAUGUUCAUUCUCUUCUAAGUGGCCCUCGUACGGUGUCAAUCAUCAUUAUCACAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUUGUUUUUUUUAUAAA---| UU UCA CUU C UUGCAAGCAAAA
CAUCGU CGA CCACU GAAGAGAAU GGAC \
GUGGCA GCU GGUGA CUUCUCUUA CUUG U
GAACACUAUUACUACUAACU^ U- CCC AU- - UAUAAGCUUAGC
. 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 5p arm may be monouridylated. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ava-Mir-12593-P1a_5p |
| mirBase accession | None |
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| Sequence |
0- ACCACUCUUGAAGAGAAUCGGAC -23
Get sequence
|
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| Star sequence |
Ava-Mir-12593-P1a_3p* |
| mirBase accession | None |
|---|
| Sequence |
50- UCAUUCUCUUCUAAGUGGCCC -71
Get sequence
|
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