| MirGeneDB ID | Pab-Mir-590 |
|---|---|
| Family name | MIR-590 (all species) |
| Seed | AAUUUUA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-590 Cfa-Mir-590 Dno-Mir-590 Eca-Mir-590 Hsa-Mir-590 Mml-Mir-590 Mmr-Mir-590 Oan-Mir-590 Ocu-Mir-590 |
| Node of Origin (locus) | Mammalia |
| Node of Origin (family) | Mammalia |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 14329021-14329081 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUCUUAAAAGUCCUGUAGCCAGUCAGAAAUGAGCUUAUUCAUAAAAGUGCAGUAUGGUGGAGUCAAUCUGUAAUUUUAUGUAUAAGCUAGUCUCUGAUUGAAACGUGCAGCAGCUGUCUUCGet precursor sequence |
| Structure | 10 20 30 40 50 UUCUUAAAAGUCCUGUAGC--| A G U G UAUGGUG CAGUCAGA AU AGCUUAU CAUAAAA UGCAG \ GUUAGUCU UG UCGAAUA GUAUUUU AUGUC G CUUCUGUCGACGACGUGCAAA^ C A U A UAACUGA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Pab-Mir-590_5p* |
| mirBase accession | None |
| Sequence |
0- GAGCUUAUUCAUAAAAGUGCAG -22
Get sequence
|
| Mature sequence | Pab-Mir-590_3p |
| mirBase accession | None |
| Sequence |
40- UAAUUUUAUGUAUAAGCUAGU -61
Get sequence
|
