MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-1677-P7

Family name MIR-1677 (all species)
Seed GACUUCA
Species Burmese python (Python bivittatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1677-P7  Cpi-Mir-1677-o7  Gja-Mir-1677-P7  Spt-Mir-1677-P7 
Node of Origin (locus) Lepidosauria
Node of Origin (family) Diapsida
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE956408.1: 78934-78991 [-]
Precursor
(pre-Mir +30nt flank)
CUUUGGUUCAUCUCCUUGCUGAGGUCCUGAACCAAAGCCCCUCGAGGACAAUGUGCGUCUUUCUAUUGACUUCAGUGGGCUUAGGAUCAGGCCCUUAAUGCAUAGCUGCUCUUGGGCA
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Structure
        10          20        30        40         50        
CUUUGGUUCAUCUCCUUGC--     U     A  A      -| C    A    GUGCG 
                     UGAGG CCUGA CC AAGCCC CU GAGG CAAU     U
                     AUUCC GGACU GG UUCGGG GA CUUC GUUA     C
ACGGGUUCUCGUCGAUACGUA     C     A  A      U^ -    A    UCUUU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Pbv-Mir-1677-P7_5p*

mirBase accessionNone
Sequence
0- ACCAAAGCCCCUCGAGGACAAU -22
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Mature sequence

Pbv-Mir-1677-P7_3p

mirBase accessionNone
Sequence
36- UGACUUCAGUGGGCUUAGGAUC -58
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