MirGeneDB ID | Pbv-Mir-1677-P7 |
Family name |
MIR-1677 (all species) |
Seed |
GACUUCA |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Aca-Mir-1677-P7
Cpi-Mir-1677-o7
Gja-Mir-1677-P7
Spt-Mir-1677-P7
|
Node of Origin (locus) |
Lepidosauria
|
Node of Origin (family) |
Diapsida
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE956408.1: 78934-78991 [-]
|
Precursor (pre-Mir +30nt flank) |
CUUUGGUUCAUCUCCUUGCUGAGGUCCUGAACCAAAGCCCCUCGAGGACAAUGUGCGUCUUUCUAUUGACUUCAGUGGGCUUAGGAUCAGGCCCUUAAUGCAUAGCUGCUCUUGGGCA
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|
Structure | 10 20 30 40 50
CUUUGGUUCAUCUCCUUGC-- U A A -| C A GUGCG
UGAGG CCUGA CC AAGCCC CU GAGG CAAU U
AUUCC GGACU GG UUCGGG GA CUUC GUUA C
ACGGGUUCUCGUCGAUACGUA C A A U^ - A UCUUU
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Pbv-Mir-1677-P7_5p* |
mirBase accession | None |
Sequence |
0- ACCAAAGCCCCUCGAGGACAAU -22
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|
Mature sequence |
Pbv-Mir-1677-P7_3p |
mirBase accession | None |
Sequence |
36- UGACUUCAGUGGGCUUAGGAUC -58
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|