MirGeneDB ID | Spt-Mir-1677-P7 |
---|---|
Family name | MIR-1677 (all species) |
Seed | CCAAAGC |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-1677-P7 Cpi-Mir-1677-o7 Gja-Mir-1677-P7 Pbv-Mir-1677-P7 |
Node of Origin (locus) | Lepidosauria |
Node of Origin (family) | Diapsida |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009472.1: 17400820-17400877 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCUGGGUUAAUUCCUUUGCUUUGGUCCUGAACCAAAGCCCAUUGAGGUCAAUGUGAGUCUUUCUGUUGACUUCAGUGGGCUCAGGAUCAGGCCCCGAGUCCAUGUCCGCUCUCUCUUUGet precursor sequence |
Structure | 10 20 30 40 50 UCUGGGUUAAUUCCUUU--| U U A AA GUGAG GCUU GG CCUGA CC AGCCCAUUGAGGUCAAU U UGAG CC GGACU GG UCGGGUGACUUCAGUUG C UUUCUCUCUCGCCUGUACC^ C C A AC UCUUU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Mature sequence | Spt-Mir-1677-P7_5p (predicted) |
mirBase accession | None |
Sequence |
0- ACCAAAGCCCAUUGAGGUCAAU -22
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|
Co-mature sequence | Spt-Mir-1677-P7_3p (predicted) |
mirBase accession | None |
Sequence |
37- GACUUCAGUGGGCUCAGGAUC -58
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|