MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-1677-P7

Family name MIR-1677 (all species)
Seed CCAAAGC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1677-P7  Cpi-Mir-1677-o7  Gja-Mir-1677-P7  Pbv-Mir-1677-P7 
Node of Origin (locus) Lepidosauria
Node of Origin (family) Diapsida
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01009472.1: 17400820-17400877 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGGGUUAAUUCCUUUGCUUUGGUCCUGAACCAAAGCCCAUUGAGGUCAAUGUGAGUCUUUCUGUUGACUUCAGUGGGCUCAGGAUCAGGCCCCGAGUCCAUGUCCGCUCUCUCUUU
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Structure
        10          20        30        40        50        
UCUGGGUUAAUUCCUUU--|   U  U     A  AA                 GUGAG 
                   GCUU GG CCUGA CC  AGCCCAUUGAGGUCAAU     U
                   UGAG CC GGACU GG  UCGGGUGACUUCAGUUG     C
UUUCUCUCUCGCCUGUACC^   C  C     A  AC                 UCUUU 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Mature sequence

Spt-Mir-1677-P7_5p (predicted)

mirBase accessionNone
Sequence
0- ACCAAAGCCCAUUGAGGUCAAU -22
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Co-mature sequence

Spt-Mir-1677-P7_3p (predicted)

mirBase accessionNone
Sequence
37- GACUUCAGUGGGCUCAGGAUC -58
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