MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-1677-P7

Family name MIR-1677 (all species)
Seed CCAAAGC
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-1677b
Paralogues Aca-Mir-1677-o1 
Orthologues Cpi-Mir-1677-o7  Gja-Mir-1677-P7  Pbv-Mir-1677-P7  Spt-Mir-1677-P7 
Node of Origin (locus) Lepidosauria
Node of Origin (family) Diapsida
Genome context
(anoCar2)
GL343197.1: 2025980-2026037 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUGGUUCAUUUCCUUGCUUAGGUCCUGAACCAAAGCCCCUCGAGGACAAUGUGAGUCUUUCUAUUGACUUCAGUGGGCUUAGGAUCAGGCCCUUAAUGCACAGCUGCUAUCAUGCA
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Structure
        10        20          30        40         50        
CUUUGGUUCAUUUCCUUGCUU--   U     A  A      -| C    A    GUGAG 
                       AGG CCUGA CC AAGCCC CU GAGG CAAU     U
                       UCC GGACU GG UUCGGG GA CUUC GUUA     C
ACGUACUAUCGUCGACACGUAAU   C     A  A      U^ -    A    UCUUU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-1677-P7_5p

mirBase accessionMIMAT0021797
Sequence
0- ACCAAAGCCCCUCGAGGACAAU -22
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Co-mature sequence

Aca-Mir-1677-P7_3p

mirBase accessionMIMAT0021798
Sequence
36- UGACUUCAGUGGGCUUAGGAUC -58
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