| MirGeneDB ID | Pca-Mir-87-o22 |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Penis worm (Priapulus caudatus) |
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| MiRBase ID |
|
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| Paralogues |
Pca-Mir-87-o23
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
P. caudatus
|
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| Node of Origin (family) |
Protostomia
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Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715638.1: 116649-116711 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUCGACUCCCUGCGUUUCGUUUCGCCGAUCAGCCUGAGACUUUGGCUCGACCUUUGCUUGCAUAAACUAGGUGAGCAAAGUUUCAGGUGUGUCGGCGCUGCGAGUGAGCUACGAUGAUGAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAUCGACUCCCUGCGUU--| UU CA G G UUGCUUG
UCGU CGCCGAU GCCUGAGACUUUG CUC ACCU \
AGCG GCGGCUG UGGACUUUGAAAC GAG UGGA C
CAAGUAGUAGCAUCGAGUG^ UC UG - - UCAAAUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pca-Mir-87-o22_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CAGCCUGAGACUUUGGCUCGACCU -24
Get sequence
|
|---|
| Mature sequence |
Pca-Mir-87-o22_3p |
| mirBase accession | None |
|---|
| Sequence |
41- GUGAGCAAAGUUUCAGGUGUGU -63
Get sequence
|
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