| MirGeneDB ID | Pca-Mir-87-o23 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Seed |
UGAGCAA |
|---|
| Species |
Penis worm (Priapulus caudatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pca-Mir-87-o22
|
|---|
| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
|---|
| Node of Origin (locus) |
P. caudatus
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715148.1: 408163-408224 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGGAGGAAACGUACGGGGCGUGCGGCCGGUCAGCCUGAAUCUUUGUCUCAACCUUGCUCGAGCGAAACAGGUGAGCAAAGUUUCAGGUGUGUCGGAAGCGCGCCGCUUUCCACGAGCGACGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGGAGGAAACGUACGGG--| GG UCA U U A UGCUCG
GCGUGC CCGG GCCUGAA CUUUG CUCA CCU A
CGCGCG GGCU UGGACUU GAAAC GAGU GGA G
AGCAGCGAGCACCUUUCGC^ AA GUG U - - CAAAGC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pca-Mir-87-o23_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGCCUGAAUCUUUGUCUCAACCU -24
Get sequence
|
|---|
| Mature sequence |
Pca-Mir-87-o23_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GUGAGCAAAGUUUCAGGUGUGU -62
Get sequence
|
|---|
